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AT5G48790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23549413 (2013): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF1995)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1995 (InterPro:IPR018962); BEST Arabidopsis thaliana protein match is: Low PSII Accumulation 3 (TAIR:AT1G73060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHZ8eggNOG:ENOG410ZP9PEMBL:AF385707EMBL:AY078017
EMBL:CP002688EnsemblPlants:AT5G48790EnsemblPlants:AT5G48790.1entrez:834937
GeneID:834937GO:GO:0009507Gramene:AT5G48790.1hmmpanther:PTHR34051
hmmpanther:PTHR34051:SF1HOGENOM:HOG000244223InterPro:IPR018962KEGG:ath:AT5G48790
OMA:EVKFARQPfam:PF09353PhylomeDB:Q94F50Proteomes:UP000006548
RefSeq:NP_568702.1STRING:3702.AT5G48790.1TAIR:AT5G48790UniGene:At.23173
UniProt:Q94F50
Coordinates (TAIR10) chr5:-:19780010..19781977
Molecular Weight (calculated) 35862.10 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.28
Length 316 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPSFSIATT VSPASLAGTL ASNSKNVLCS LHSKNNDITK TNRNLKFRAC SVSGGYNNNT SVDNVPFPRD YVELINQAKE AVEMALKDEK QLMEIEFPTS
101: GLASVPGDGE GATEMTESIN MIREFCDRLL APEKARSTRI FFPEANEVKF AQKTVFGGTY FKLDYLTKPS LFEDFGFFER VKMADRVKPE DELFLVAYPY
201: FNVNEMLVVE ELYKEAVVNT DRKLIIFNGE LDRIRSGYYP KFFYPKLAAL TKTLLPKMET VYYIHNFKGQ KGGVLFRCYP GPWQVLRRTR NKYICVHQQE
301: SMPSLKEVAL DILASA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)