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AT1G56500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : haloacid dehalogenase-like hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, oxidoreductase activity, catalytic activity; INVOLVED IN: metabolic process, cell redox homeostasis; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Low-density lipoprotein receptor, class B (YWTD) repeat (InterPro:IPR000033), Thioredoxin fold (InterPro:IPR012335), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Thioredoxin-like (InterPro:IPR017936), NHL repeat (InterPro:IPR001258), Thioredoxin-like fold (InterPro:IPR012336), Redoxin (InterPro:IPR013740), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT3G07060.1); Has 23445 Blast hits to 20574 proteins in 2565 species: Archae - 340; Bacteria - 17044; Metazoa - 1036; Fungi - 332; Plants - 721; Viruses - 3; Other Eukaryotes - 3969 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0637eggNOG:KOG2177eggNOG:KOG2914EMBL:AY065399
EMBL:CP002684EnsemblPlants:AT1G56500EnsemblPlants:AT1G56500.1entrez:842103
Gene3D:2.120.10.30Gene3D:3.40.30.10Gene3D:3.40.50.1000GeneID:842103
GO:GO:0009507GO:GO:0009534GO:GO:0009570GO:GO:0010196
GO:GO:0016787GO:GO:0042651Gramene:AT1G56500.1gramene_pathway:2.7.1.26
gramene_pathway:2.7.7.2gramene_pathway:RIBOSYN2-PWYhmmpanther:PTHR24104hmmpanther:PTHR24104:SF13
HOGENOM:HOG000030168InterPro:IPR000033InterPro:IPR001258InterPro:IPR006439
InterPro:IPR011042InterPro:IPR012336InterPro:IPR023214KEGG:ath:AT1G56500
OMA:AGYKDGPPfam:PF01436Pfam:PF13419Pfam:PF13905
Pfscan:PS51352PhylomeDB:Q8VZ10PRINTS:PR00413PROSITE:PS51352
Proteomes:UP000006548RefSeq:NP_564718.2SMART:SM00135SMR:Q8VZ10
STRING:3702.AT1G56500.1SUPFAM:SSF101898SUPFAM:SSF52833SUPFAM:SSF56784
TAIR:AT1G56500TIGRfam:TIGR01509TIGRFAMs:TIGR01509UniGene:At.28196
UniProt:Q8VZ10
Coordinates (TAIR10) chr1:+:21159775..21167092
Molecular Weight (calculated) 114409.00 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.22
Length 1055 amino acids
Sequence (TAIR10)
(BLAST)
0001: MALKLTSPPS VFSQSRRLSS SSLIPIRSKS TFTGFRSRTG VYLSKTTALQ SSTKLSVAAE SPAATIATDD WGKVSAVLFD MDGVLCNSED LSRRAAVDVF
0101: TEMGVEVTVD DFVPFMGTGE AKFLGGVASV KEVKGFDPDA AKERFFEIYL DKYAKPESGI GFPGALELVT ECKNKGLKVA VASSADRIKV DANLKAAGLS
0201: LTMFDAIVSA DAFENLKPAP DIFLAAAKIL GVPTSECVVI EDALAGVQAA QAANMRCIAV KTTLSEAILK DAGPSMIRDD IGNISINDIL TGGSDSTRNS
0301: TAMLEENTVS DKTSANGFQG SRRDILRYGS LGIALSCVYF AATNWKAMQY ASPKALWNAL VGAKSPSFTQ NQGEGRVQQF VDYIADLESK QTATTVPEFP
0401: SKLDWLNTAP LQFRRDLKGK VVILDFWTYC CINCMHVLPD LEFLEKKYKD MPFTVVGVHS AKFDNEKDLD AIRNAVLRYD ISHPVVNDGD MYMWRELGIN
0501: SWPTFAVVSP NGKVIAQIAG EGHRKDLDDV VAAALTYYGG KNVLDSTPLP TRLEKDNDPR LATSPLKFPG KLAIDTLNNR LFISDSNHNR IIVTDLEGNF
0601: IVQIGSSGEE GFQDGSFEDA AFNRPQGLAY NAKKNLLYVA DTENHALREI DFVNERVQTL AGNGTKGSDY QGGRKGTKQL LNSPWDVCFE PVNEKVYIAM
0701: AGQHQIWEYS VLDGITRVFS GNGYERNLNG STPQTTSFAQ PSGISLGPDL KEAYIADSES SSIRALDLQT GGSRLLAGGD PYFSENLFKF GDNDGVGAEV
0801: LLQHPLGVLC ANDGQIYLTD SYNHKIKKLD PVTKRVVTLA GTGKAGFKDG KVKGAQLSEP AGLAITENGR LFVADTNNSL IRYIDLNKGE DSEILTLELK
0901: GVQPPTPKAK SLKRLRKRAS ADTKIVKVDS VTSREGDLNL KISLPDGYHF SKEARSKFVV DVEPENAVAI DPTEGTLSPE GSTMLHFIQS STSASVGKIS
1001: CKVYYCKEDE VCLYQSVQFE VPFKVESELS ASPTITFTVT PRAPDAGGLQ LQGTR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)