AT4G14210.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : phytoene desaturase 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
phytoene desaturase 3 (PDS3); FUNCTIONS IN: phytoene dehydrogenase activity; INVOLVED IN: carotenoid biosynthetic process, carotene biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Phytoene desaturase (InterPro:IPR014102); BEST Arabidopsis thaliana protein match is: zeta-carotene desaturase (TAIR:AT3G04870.2); Has 4307 Blast hits to 4306 proteins in 952 species: Archae - 70; Bacteria - 2299; Metazoa - 368; Fungi - 90; Plants - 493; Viruses - 0; Other Eukaryotes - 987 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:8190426..8194769 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 62967.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 566 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVVFGNVSAA NLPYQNGFLE ALSSGGCELM GHSFRVPTSQ ALKTRTRRRS TAGPLQVVCV DIPRPELENT VNFLEAASLS ASFRSAPRPA KPLKVVIAGA 101: GLAGLSTAKY LADAGHKPLL LEARDVLGGK IAAWKDEDGD WYETGLHIFF GAYPNVQNLF GELGINDRLQ WKEHSMIFAM PSKPGEFSRF DFPDVLPAPL 201: NGIWAILRNN EMLTWPEKIK FAIGLLPAMV GGQAYVEAQD GLSVKEWMEK QGVPERVTDE VFIAMSKALN FINPDELSMQ CILIALNRFL QEKHGSKMAF 301: LDGNPPERLC MPVVDHIRSL GGEVQLNSRI KKIELNDDGT VKSFLLTNGS TVEGDAYVFA APVDILKLLL PDPWKEIPYF KKLDKLVGVP VINVHIWFDR 401: KLKNTYDHLL FSRSNLLSVY ADMSLTCKEY YDPNRSMLEL VFAPAEEWIS RTDSDIIDAT MKELEKLFPD EISADQSKAK ILKYHVVKTP RSVYKTIPNC 501: EPCRPLQRSP IEGFYLAGDY TKQKYLASME GAVLSGKFCS QSIVQDYELL AASGPRKLSE ATVSSS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)