suba logo
AT3G19170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.500
plastid 0.500
ASURE: mitochondrion,plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : presequence protease 1
Curator
Summary (TAIR10)
Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers
Computational
Description (TAIR10)
presequence protease 1 (PREP1); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: response to cadmium ion, proteolysis, protein maturation by peptide bond cleavage; LOCATED IN: mitochondrion, apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16C associated (InterPro:IPR013578), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: presequence protease 2 (TAIR:AT1G49630.2); Has 4222 Blast hits to 4196 proteins in 1321 species: Archae - 9; Bacteria - 2812; Metazoa - 224; Fungi - 268; Plants - 81; Viruses - 0; Other Eukaryotes - 828 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1641-MONOMERBioCyc:ARA:GQT-1642-MONOMERBioGrid:6784EC:3.4.24.-
eggNOG:COG1026eggNOG:KOG2019EMBL:AP000419EMBL:AY090240
EMBL:AY091051EMBL:BT002372EMBL:BT006362EMBL:CP002686
EnsemblPlants:AT3G19170EnsemblPlants:AT3G19170.1entrez:821451EvolutionaryTrace:Q9LJL3
ExpressionAtlas:Q9LJL3Gene3D:3.30.830.10GeneID:821451Genevisible:Q9LJL3
GO:GO:0004222GO:GO:0005739GO:GO:0005759GO:GO:0008270
GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0016485
GO:GO:0046686GO:GO:0048046hmmpanther:PTHR11851hmmpanther:PTHR11851:SF68
HOGENOM:HOG000008829InParanoid:Q9LJL3IntAct:Q9LJL3InterPro:IPR007863
InterPro:IPR011237InterPro:IPR011249InterPro:IPR011765InterPro:IPR013578
iPTMnet:Q9LJL3MEROPS:M16.012MINT:MINT-7231907ncoils:Coil
OMA:HAANKERPaxDb:Q9LJL3PDB:2FGEPDBsum:2FGE
Pfam:PF00675Pfam:PF05193Pfam:PF08367Pfam:Q9LJL3
PhylomeDB:Q9LJL3PRIDE:Q9LJL3PRO:PR:Q9LJL3ProteinModelPortal:Q9LJL3
Proteomes:UP000006548RefSeq:NP_188548.2SMART:SM01264SMR:Q9LJL3
STRING:3702.AT3G19170.1SUPFAM:SSF63411TAIR:AT3G19170tair10-symbols:ATPREP1
tair10-symbols:ATZNMPtair10-symbols:PREP1UniGene:At.27915UniProt:Q9LJL3
Coordinates (TAIR10) chr3:-:6625578..6631874
Molecular Weight (calculated) 121021.00 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.32
Length 1080 amino acids
Sequence (TAIR10)
(BLAST)
0001: MLRTVSCLAS RSSSSLFFRF FRQFPRSYMS LTSSTAALRV PSRNLRRISS PSVAGRRLLL RRGLRIPSAA VRSVNGQFSR LSVRAVATQP APLYPDVGQD
0101: EAEKLGFEKV SEEFISECKS KAILFKHKKT GCEVMSVSNE DENKVFGVVF RTPPKDSTGI PHILEHSVLC GSRKYPVKEP FVELLKGSLH TFLNAFTYPD
0201: RTCYPVASTN TKDFYNLVDV YLDAVFFPKC VDDAHTFQQE GWHYELNDPS EDISYKGVVF NEMKGVYSQP DNILGRIAQQ ALSPENTYGV DSGGDPKDIP
0301: NLTFEEFKEF HRQYYHPSNA RIWFYGDDDP VHRLRVLSEY LDMFEASPSP NSSKIKFQKL FSEPVRLVEK YPAGRDGDLK KKHMLCVNWL LSEKPLDLQT
0401: QLALGFLDHL MLGTPASPLR KILLESGLGE ALVSSGLSDE LLQPQFGIGL KGVSEENVQK VEELIMDTLK KLAEEGFDND AVEASMNTIE FSLRENNTGS
0501: FPRGLSLMLQ SISKWIYDMD PFEPLKYTEP LKALKTRIAE EGSKAVFSPL IEKLILNNSH RVTIEMQPDP EKATQEEVEE KNILEKVKAA MTEEDLAELA
0601: RATEELKLKQ ETPDPPEALR CVPSLNLGDI PKEPTYVPTE VGDINGVKVL RHDLFTNDII YTEVVFDIGS LKHELLPLVP LFCQSLLEMG TKDLTFVQLN
0701: QLIGRKTGGI SVYPLTSSVR GKDEPCSKII VRGKSMAGRA DDLFNLMNCL LQEVQFTDQQ RFKQFVSQSR ARMENRLRGS GHGIAAARMD AMLNIAGWMS
0801: EQMGGLSYLE FLHTLEKKVD EDWEGISSSL EEIRRSLLAR NGCIVNMTAD GKSLTNVEKS VAKFLDLLPE NPSGGLVTWD GRLPLRNEAI VIPTQVNYVG
0901: KAGNIYSTGY ELDGSAYVIS KHISNTWLWD RVRVSGGAYG GFCDFDSHSG VFSYLSYRDP NLLKTLDIYD GTGDFLRGLD VDQETLTKAI IGTIGDVDSY
1001: QLPDAKGYSS LLRHLLGVTD EERQRKREEI LTTSLKDFKD FAQAIDVVRD KGVAVAVASA EDIDAANNER SNFFEVKKAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)