AT1G15980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NDH-dependent cyclic electron flow 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NDH-dependent cyclic electron flow 1 (NDF1); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 119 Blast hits to 119 proteins in 57 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5489314..5491199 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51025.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.92 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 461 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSLPLLPK PISPFFKTPP FSTSKPLVFL NFQTRLTSRS SDVSVNLKKK NNPWLDPFDS GEDPDNEYGS LFADGKQDED PRPPDNPDNP YGFLKFPKGY 101: TVELASLPLK IRGDVRRCCC VISGGVYENL LFFPTIQLIK DRYPGVQVDI LTTERGKQTY ELNKNVRWAN VYDPDDHWPE PAEYTDMIGL LKGRYYDMVL 201: STKLAGLGHA AFLFMTTARD RVSYIYPNVN SAGAGLMLSE TFTAENTNLS ELGYSMYTQM EDWLGRPFRS VPRTPLLPLR VSISRKVKEV VAAKYRNAGA 301: VTGKFIVIHG IESDSKASMQ SKGDADSLLS LEKWAKIIKG VRGFKPVFVI PHEKERENVE DFVGDDTSIV FITTPGQLAA LINDSAGVIA TNTAAIQLAN 401: ARDKPCIGLF SSEEKGKLFV PYAEEKSNCV IIASKTGKLA DIDIGTVKNA MQVFEGSLAL V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)