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AT5G44520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NagB/RpiA/CoA transferase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: Ribose 5-phosphate isomerase, type A protein (TAIR:AT3G04790.1); Has 2560 Blast hits to 2560 proteins in 1021 species: Archae - 184; Bacteria - 1763; Metazoa - 86; Fungi - 39; Plants - 144; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).
Protein Annotations
BioGrid:19729EC:5.3.1.6eggNOG:COG0120eggNOG:KOG3075
EMBL:AB017065EMBL:AK221659EMBL:AY065286EMBL:AY087134
EMBL:AY133736EMBL:CP002688EnsemblPlants:AT5G44520EnsemblPlants:AT5G44520.1
entrez:834479GeneID:834479Genevisible:Q9FI13GO:GO:0004751
GO:GO:0009052GO:GO:0009507Gramene:AT5G44520.1gramene_plant_reactome:1119519
gramene_plant_reactome:6877180hmmpanther:PTHR11934hmmpanther:PTHR11934:SF8HOGENOM:HOG000029564
InParanoid:Q9FI13IntAct:Q9FI13InterPro:IPR004788KEGG:00030+5.3.1.6
KEGG:00051+5.3.1.6KEGG:00710+5.3.1.6KEGG:ath:AT5G44520KO:K01807
OMA:VWRRASVPANTHER:PTHR11934PaxDb:Q9FI13Pfam:PF06026
Pfam:Q9FI13PhylomeDB:Q9FI13PRIDE:Q9FI13PRO:PR:Q9FI13
ProteinModelPortal:Q9FI13Proteomes:UP000006548RefSeq:NP_199265.1SMR:Q9FI13
STRING:3702.AT5G44520.1SUPFAM:SSF100950SUPFAM:SSF75445TAIR:AT5G44520
UniGene:At.28529UniPathway:UPA00115UniProt:Q9FI13
Coordinates (TAIR10) chr5:-:17934610..17936441
Molecular Weight (calculated) 32165.30 Da
IEP (calculated) 4.92
GRAVY (calculated) 0.01
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTATASTPF SLSSSVVFTR RRNFKRFPVC ASLSPEVSPL LRAAHHTVDN YVKSGMIIGL GSGEASDFAI RYLGQQLGSG SLHNVVGVPM SARSASEAAK
101: YGIPLEYYRD GVQIDFAFHD ADAVEENTLI AVIGRRRSSQ EDDYILKQKS IVKVADEAVF MIKEEQYKAG LEGSIPVLVQ SLNWLAIAEE IDDLYLGDAE
201: VWRRASVENE GPLGGDFPIV TSDGHNILDV IFTTPIRSLA DLATSLDKID GVVDHGLIIK TRCTVVIAEE TVVRSVTLQT SALEGGVRTY GQTLQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)