AT5G44510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.781 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : target of AVRB operation1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes TAO1 (Target of AvrB Operation), a TIR-NB-LRR protein that contributes to disease resistance induced by the Pseudomonas syringae effector AvrB. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
target of AVRB operation1 (TAO1); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: defense response to bacterium, defense response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 64497 Blast hits to 28534 proteins in 952 species: Archae - 44; Bacteria - 3015; Metazoa - 6184; Fungi - 445; Plants - 50575; Viruses - 21; Other Eukaryotes - 4213 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17929673..17934188 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 134229.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.92 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1187 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSSCFLVYR IFRFRKRNKN ISSSLSSSSP PSSLSQNWLH PVFLSFRGED VRKGLLSHIQ KEFQRNGITP FIDNEMKRGG SIGPELLQAI RGSKIAIILL 0101: SRNYGSSKWC LDELVEIMKC REELGQTVMT VFYDVDPSDV RKQKGDFGKV FKKTCVGRPE EMVQRWKQAL TSAANILGED SRNWENEADM IIKISKDVSD 0201: VLSFTPSKDF DEFVGIEAHT TEITSLLQLD LEEVRMIGIW GPAGIGKTTI SRVLYNKLFH QFQLGAIIDN IKVRYPRPCH DEYSAKLQLQ KELLSQMINQ 0301: KDMVVPHLGV AQERLKDKKV LLVLDDVDGL VQLDAMAKDV QWFGLGSRII VVTQDLKLLK AHGIKYIYKV DFPTSDEALE IFCMYAFGEK SPKVGFEQIA 0401: RTVTTLAGKL PLGLRVMGSY LRRMSKQEWA KSIPRLRTSL DDDIESVLKF SYNSLAEQEK DLFLHITCFF RRERIETLEV FLAKKSVDMR QGLQILADKS 0501: LLSLNLGNIE MHNLLVQLGL DIVRKQSIHK PGKRQFLVDT EDICEVLTDD TGTRTLIGID LELSGVIEGV INISERAFER MCNLQFLRFH HPYGDRCHDI 0601: LYLPQGLSHI SRKLRLLHWE RYPLTCLPPK FNPEFLVKIN MRDSMLEKLW DGNEPIRNLK WMDLSFCVNL KELPDFSTAT NLQELRLINC LSLVELPSSI 0701: GNATNLLELD LIDCSSLVKL PSSIGNLTNL KKLFLNRCSS LVKLPSSFGN VTSLKELNLS GCSSLLEIPS SIGNIVNLKK VYADGCSSLV QLPSSIGNNT 0801: NLKELHLLNC SSLMECPSSM LNLTRLEDLN LSGCLSLVKL PSIGNVINLQ SLYLSDCSSL MELPFTIENA TNLDTLYLDG CSNLLELPSS IWNITNLQSL 0901: YLNGCSSLKE LPSLVENAIN LQSLSLMKCS SLVELPSSIW RISNLSYLDV SNCSSLLELN LVSHPVVPDS LILDAGDCES LVQRLDCFFQ NPKIVLNFAN 1001: CFKLNQEARD LIIQTSACRN AILPGEKVPA YFTYRATGDS LTVKLNQKYL LQSLRFKACL LLVEGQNKWP NWGMNLVTSR EPDGHIVLYT PSSHLQGPLL 1101: MENLYTFEFE LVVTSSEFVL EFRADRYKCA LGRFDKFGVH VVWCHLDQYE SKSPSCKPFW RDFPIVISNG QNILDAILKT PMPSINQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)