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AT4G16920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.820
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16950.2); Has 33072 Blast hits to 18315 proteins in 784 species: Archae - 24; Bacteria - 2125; Metazoa - 2462; Fungi - 169; Plants - 26873; Viruses - 34; Other Eukaryotes - 1385 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IGA8EMBL:AL161545EMBL:CP002687
EMBL:Z97342EnsemblPlants:AT4G16920EnsemblPlants:AT4G16920.1entrez:827400
Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:827400
GO:GO:0005524GO:GO:0007165GO:GO:0043531Gramene:AT4G16920.1
hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702InterPro:IPR000157
InterPro:IPR002182InterPro:IPR003593InterPro:IPR011713InterPro:IPR011991
InterPro:IPR027417InterPro:IPR032675KEGG:ath:AT4G16920Pfam:PF00931
Pfam:PF01582Pfam:PF07725Pfscan:PS50104PhylomeDB:Q9SUK4
PIR:G85188PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_193425.1
SMART:SM00255SMART:SM00382SMR:Q9SUK4STRING:3702.AT4G16920.1
SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT4G16920UniGene:At.33039UniGene:At.43451UniProt:Q9SUK4
Coordinates (TAIR10) chr4:-:9519173..9525691
Molecular Weight (calculated) 147738.00 Da
IEP (calculated) 5.22
GRAVY (calculated) -0.14
Length 1304 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAAASSSGSD IFPSFSGEDV RKNFLSHLLK QLNRRSINTF MDHVIERSCI IADALISAIR EARISIVIFS KNYAASTWCL NELVEIDNCS KYFGQKVIPV
0101: FYDVDPSHVR KQIGEFGKVF KKTCEDKPAD QKQRWVKALT DISNIAGEDL RNGPNDAHMV EKIANDVSNK LFHPPKGFGD LVGIEDHIEA IKSILCLESK
0201: EAKIMVGIWG QSGIGKSTIG RALFSQLSSQ FPLRAFVTYK STSGSDVSGM KLSWQKELLS EILGQKDIKI DHFGVVEQRL KHKKVLILLD DVDNLEFLKT
0301: LVGKAEWFGS GSRIIVITQD RQLLKAHEID LVYEVKLPSQ GLALQMISQY AFGKDSPPDD FKALAFEVAE LAGSLPLGLS VLGSSLKGRD KDEWVKMMPR
0401: LRNDSDDKIE ETLRVCYDRL NKKNRELFKC IACFFNGFKV SNVKELLEDD VGLTMLVEKS LIRITPDGDI EMHNLLEKLG REIDRAKSKG NPGKRQFLTN
0501: FEDIQEVLAE KTGTEILLGI RLPHPGYLTT RSFLIDEKLF KGMRNLQYLE IGYWSDGDLP QSLVYLPLKL RLLEWVYCPL KSLPSTFRAE YLVKLIMKNS
0601: KLEKLWEGTL PLGSLKKMNL WYSKYFKEIP DLSLAINLEE LNLSECESLV TLPSSIQNAI KLRTLYCSGV LLIDLKSLEG MCNLEYLSVD CSRMEGTQGI
0701: VYFPSKLRLL LWNNCPLKRL HSNFKVEYLV KLRMENSDLE KLWDGTQPLG RLKQMFLRGS KYLKEIPDLS LAINLEEVDI CKCESLVTFP SSMQNAIKLI
0801: YLDISDCKKL ESFPTDLNLE SLEYLNLTGC PNLRNFPAIK MGCSDVDFPE GRNEIVVEDC FWNKNLPAGL DYLDCLMRCM PCEFRPEYLV FLNVRCYKHE
0901: KLWEGIQSLG SLEEMDLSES ENLTEIPDLS KATNLKHLYL NNCKSLVTLP STIGNLQKLV RLEMKECTGL EVLPTDVNLS SLETLDLSGC SSLRTFPLIS
1001: KSIKWLYLEN TAIEEILDLS KATKLESLIL NNCKSLVTLP STIGNLQNLR RLYMKRCTGL EVLPTDVNLS SLGILDLSGC SSLRTFPLIS TNIVWLYLEN
1101: TAIGEVPCCI EDFTRLRVLL MYCCQRLKNI SPNIFRLRSL MFADFTDCRG VIKALSDATV VATMEDHVSC VPLSENIEYT CERFWDALYD DDYKNYFKFC
1201: CSNRIKECGV RLLYVYQETE YNQQTTRSEK RMGMTSGTSE EYINLPYGQI VADSGLAALN MELSLGQGEA SSSTSLEGEA LCVDYMITEE QDEEIPILST
1301: DSGN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)