AT5G05400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LRR and NB-ARC domains-containing disease resistance protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G63020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1597745..1600369 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99762.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 874 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGACFSVAIS CDQAVNNLTS CLSRNQNRFR NLVDHVAALK KTVRQLEARR DDLLKRIKVQ EDRGLNLLDE VQQWLSEVES RVCEAHDILS QSDEEIDNLC 101: CGQYCSKRCK YSYDYSKSVI NKLQDVENLL SKGVFDEVAQ KGPIPKVEER LFHQEIVGQE AIVESTWNSM MEVGVGLLGI YGMGGVGKTT LLSQINNKFR 201: TVSNDFDIAI WVVVSKNPTV KRIQEDIGKR LDLYNEGWEQ KTENEIASTI KRSLENKKYM LLLDDMWTKV DLANIGIPVP KRNGSKIAFT SRSNEVCGKM 301: GVDKEIEVTC LMWDDAWDLF TRNMKETLES HPKIPEVAKS IARKCNGLPL ALNVIGETMA RKKSIEEWHD AVGVFSGIEA DILSILKFSY DDLKCEKTKS 401: CFLFSALFPE DYEIGKDDLI EYWVGQGIIL GSKGINYKGY TIIGTLTRAY LLKESETKEK VKMHDVVREM ALWISSGCGD QKQKNVLVVE ANAQLRDIPK 501: IEDQKAVRRM SLIYNQIEEA CESLHCPKLE TLLLRDNRLR KISREFLSHV PILMVLDLSL NPNLIELPSF SPLYSLRFLN LSCTGITSLP DGLYALRNLL 601: YLNLEHTYML KRIYEIHDLP NLEVLKLYAS GIDITDKLVR QIQAMKHLYL LTITLRNSSG LEIFLGDTRF SSYTEGLTLD EQSYYQSLKV PLATISSSRF 701: LEIQDSHIPK IEIEGSSSNE SEIVGPRVRR DISFINLRKV RLDNCTGLKD LTWLVFAPHL ATLYVVCLPD IEHIISRSEE SRLQKTCELA GVIPFRELEF 801: LTLRNLGQLK SIYRDPLLFG KLKEINIKSC PKLTKLPLDS RSAWKQNVVI NAEEEWLQGL QWEDVATKER FFPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)