AT5G45080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.901 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phloem protein 2-A6 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
phloem protein 2-A6 (PP2-A6); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: phloem protein 2-A8 (TAIR:AT5G45070.1); Has 1848 Blast hits to 1780 proteins in 64 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1848; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18191575..18193207 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44144.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 392 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSSVVKP TPTGPQVFIC FRGADVRKHF ISFLVPALRE ANINVFIDEN EFLGSEMANL LTRIEESELA LVIFSVDFTR SHRCLNELAK IKERKDQGRL 101: IVIPIFYKVK PSAVKFLEGK FGDNFRALER NNRHMLPITQ KWKEALESIP GSIGMPLAEQ SERTDNDFIN SMVIKIQQLL ENMAVRRNNE IEAQRKLVSI 201: VPPKKPKGEA NPQGGSMVPA RKPEREASQE GSSVVPSMVP ARDLDITHSE KPQKWTWSTI NEAPNSAEIE IATLNKVYWL KIVGTITTEN LTPGAKYEAV 301: FVVKLENNAS GWEQPVNLKL KVVQHDGDDD RVDRTENLND YIGQNWVDIL AGVFVVPPKT TPATIIFTMY QYEDKYKKKG LVVKGVAIRP TN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)