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AT2G28990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.751
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30447334 (2019): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat protein kinase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G28970.1); Has 164585 Blast hits to 121622 proteins in 4513 species: Archae - 85; Bacteria - 13458; Metazoa - 43809; Fungi - 9980; Plants - 78212; Viruses - 403; Other Eukaryotes - 18638 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G28990-MONOMERBioGrid:2798EC:2.7.11.1eggNOG:COG0515
eggNOG:ENOG410IF1SEMBL:AC005315EMBL:CP002685EMBL:FJ708706
EnsemblPlants:AT2G28990EnsemblPlants:AT2G28990.1entrez:817448Gene3D:2.60.120.200
Gene3D:3.80.10.10GeneID:817448Genevisible:O81069GO:GO:0004674
GO:GO:0005524GO:GO:0016021Gramene:AT2G28990.1hmmpanther:PTHR27003
hmmpanther:PTHR27003:SF44HOGENOM:HOG000116550InParanoid:O81069InterPro:IPR000719
InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320InterPro:IPR017441
InterPro:IPR024788InterPro:IPR032675KEGG:ath:AT2G28990OMA:NEERTHI
PaxDb:O81069Pfam:O81069Pfam:PF00069Pfam:PF12819
Pfscan:PS50011PhylomeDB:O81069PIR:T02731PRIDE:O81069
PRO:PR:O81069PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011
ProteinModelPortal:O81069Proteomes:UP000006548RefSeq:NP_180465.1scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMR:O81069STRING:3702.AT2G28990.1
SUPFAM:SSF52058SUPFAM:SSF56112TAIR:AT2G28990TMHMM:TMhelix
UniGene:At.52960UniProt:O81069
Coordinates (TAIR10) chr2:+:12455055..12459541
Molecular Weight (calculated) 98761.10 Da
IEP (calculated) 6.06
GRAVY (calculated) -0.19
Length 884 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIHLLLAMI GTFVVIIGAQ DQEGFISLDC GLPSDESPYD DSFNGLTFTS DSTFIQTGKI DSVDKDLNIN LSKQYLTLRY FPEGKRNCYS LDVKRGTTYL
101: IVVSFVYGNY DGLNRDPNFD IHLGPNKWKR IDLDGEKEGT REEIIHKARS NSLDICLVKT GETLPIISAI EIRPLRNNTY VTQSGSLMMS FRVYLSNSDA
201: SIRYADDVHD RIWSPFNGSS HTHITTDLNI NNSNAYEIPK NILQTAAIPR NASAPLIITW DPLPINAEVY LYMHFAEIQT LEANETRQFD VILRGNFNHS
301: GFSPTKLKVF TLYTEEPMKC GSEGCYLQLV KTPNSTLPPL INAIEAYSVI EFSQLETSLS DVDAIKNIKN TYKLNKITWQ GDPCLPQDLS WESIRCTYVD
401: GSTSPTIISL DLSKSGLNGS IPQILQNFTQ LQELDLSNNS LTGPVPIFLA NMKTLSLINL SGNNLSGSVP QALLDKEKEG LVLKLEGNPD LCKSSFCNTE
501: KKNKFLLPVI ASAASLVIVV VVVALFFVFR KKKASPSNLH APPSMPVSNP GHNSQSESSF TSKKIRFTYS EVQEMTNNFD KALGEGGFGV VYHGFVNVIE
601: QVAVKLLSQS SSQGYKHFKA EVELLMRVHH INLVSLVGYC DEGEHLALIY EYMPNGDLKQ HLSGKHGGFV LSWESRLKIV LDAALGLEYL HTGCVPPMVH
701: RDIKTTNILL DQHLQAKLAD FGLSRSFPIG NEKNVSTVVA GTPGYLDPEY YQTNWLTEKS DIYSFGIVLL EIISNRPIIQ QSREKPHIVE WVSFMITKGD
801: LRSIMDPNLH QDYDIGSVWK AIELAMSCVS LSSARRPNMS RVVNELKECL ISETSRIGEG RDMESKGSME FSRDIYNEVI PQAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)