AT2G28960.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G29000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:12438058..12442347 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 98970.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 880 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEGRRQRLLV FIFGALAITH LVQAQPPDQR GFISLDCGLP VNESPYTDPR TGLTFSSDAD FILSGLRGEA GDDNTYIYRQ YKDLRYFPDG IRNCYNLKVE 101: QGINYLIRAG FGYGNYDGLN VYPKFDLHVG PNMWIAVDLE FGKDREIIYM TTSNLLQICL VKTGSTIPMI STLELRPLRN DSYLTQFGPL DLIYRRAYSS 201: NSTGFIRYPD DIFDRKWDRY NEFETDVNTT LNVRSSSPFQ VPEAVSRMGI TPENASLPLR FYVSLDDDSD KVNVYFHFAE IQALRGNETR EFDIELEEDI 301: IQSAYSPTML QSDTKYNLSP HKCSSGLCYL KLVRTPRSTL PPLISAIEAF KVVDFPYAET NPNDVAAMKD IEAFYGLKMI SWQGDPCVPE LLKWEDLKCS 401: YTNKSTPPRI ISLDLSSRGL KGVIAPAFQN LTELRKLDLS NNSFTGGVPE FLASMKSLSI INLNWNDLTG PLPKLLLDRE KNGLKLTIQG NPKLCNDASC 501: KNNNNQTYIV PVVASVASVL IIIAVLILIL VFKKRRPTQV DSLPTVQHGL PNRPSIFTQT KRFTYSEVEA LTDNFERVLG EGGFGVVYHG ILNGTQPIAV 601: KLLSQSSVQG YKEFKAEVEL LLRVHHVNLV SLVGYCDEES NLALLYEYAP NGDLKQHLSG ERGGSPLKWS SRLKIVVETA QGLEYLHTGC KPPMVHRDVK 701: TTNILLDEHF QAKLADFGLS RSFPVGGETH VSTAVAGTPG YLDPEYYRTN RLNEKSDVYS FGIVLLEIIT SRPVIQQTRE KPHIAAWVGY MLTKGDIENV 801: VDPRLNRDYE PTSVWKALEI AMSCVNPSSE KRPTMSQVTN ELKQCLTLEN SKRGVREDMG SRSSVEMSTS FTTEINPKAR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)