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AT2G42060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G27660.1); Has 1568 Blast hits to 620 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1565; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JCSWeggNOG:ENOG41113TDEMBL:BT010858EMBL:BT012616
EMBL:CP002685EMBL:U90439EnsemblPlants:AT2G42060EnsemblPlants:AT2G42060.1
entrez:818806GeneID:818806GO:GO:0005622GO:GO:0035556
GO:GO:0046872GO:GO:0047134Gramene:AT2G42060.1hmmpanther:PTHR13871
hmmpanther:PTHR13871:SF50HOGENOM:HOG000115401InterPro:IPR002219InterPro:IPR004146
KEGG:ath:AT2G42060ncoils:CoilOMA:HEQCGNAPfam:PF03107
Pfam:PF07649Pfscan:PS50081PhylomeDB:P93741PIR:D84849
PROSITE:PS50081Proteomes:UP000006548RefSeq:NP_181736.1SMART:SM00109
SMR:P93741SUPFAM:SSF57889TAIR:AT2G42060UniGene:At.20272
UniProt:P93741
Coordinates (TAIR10) chr2:+:17548194..17549000
Molecular Weight (calculated) 29362.70 Da
IEP (calculated) 5.91
GRAVY (calculated) -0.15
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYKHFSHPH TLKLQQIQPH KSSDSSVICS GCESAISESE TAYICSTCDF NLHEQCGNAV RGMQHPSHAG LHHLTLVPYT TYSAGTFLCR ACGCTGGKGF
101: SYCCPLCDFD LHVQCAHLPQ VLVHESHPMH SLLLVYNSTP PMSFTQFGFG NQLVCNLCNM TMDGRFWSYN CYACNYHIHA SCAVNKPNPV AASAENCGAS
201: DEGKTPTAES VPVQGLETEQ TEQVAAITEQ VEDPVLRQQL ELQKLQLELD MSSALANMIG SFNLSSFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)