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AT2G39530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23990937 (2013): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G39518.1); Has 200 Blast hits to 200 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:3876eggNOG:ENOG410J0CQeggNOG:ENOG410ZDYNEMBL:AC004218
EMBL:AK118915EMBL:BT005644EMBL:CP002685EnsemblPlants:AT2G39530
EnsemblPlants:AT2G39530.1entrez:818538GeneID:818538Genevisible:Q8GWD5
GO:GO:0005829GO:GO:0005886GO:GO:0016021GO:GO:0016226
GO:GO:0051536Gramene:AT2G39530.1hmmpanther:PTHR11615hmmpanther:PTHR11615:SF148
HOGENOM:HOG000090983InParanoid:Q8GWD5InterPro:IPR006702KEGG:ath:AT2G39530
OMA:DMIDIREPaxDb:Q8GWD5Pfam:PF04535Pfam:Q8GWD5
PhylomeDB:Q8GWD5PIR:T00563PRIDE:Q8GWD5PRO:PR:Q8GWD5
ProteinModelPortal:Q8GWD5Proteomes:UP000006548RefSeq:NP_181485.2STRING:3702.AT2G39530.1
TAIR:AT2G39530TMHMM:TMhelixUniGene:At.27909UniProt:Q8GWD5
Coordinates (TAIR10) chr2:-:16498659..16499401
Molecular Weight (calculated) 19204.60 Da
IEP (calculated) 9.20
GRAVY (calculated) 0.74
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPPPPAPPS VTLRTVLLLL RVLTAAFLLI TVVLISTNTV TLEISSTSIK LPFNDVYAYR YMLSAAVIGL VYAVVQLFLT ISQFATGKTH PLTYQFDFYG
101: DKVISYLLAT GSAAGFGVSK DLKDTYIALI EFDSTDPVDK FFSKGYASAS LLLFAFVSLA VLSVFSSLAL SKRPVPVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)