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AT2G44370.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G17740.1); Has 2013 Blast hits to 769 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 7; Plants - 1977; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSYXeggNOG:ENOG41108CEEMBL:AC004521EMBL:BT011214
EMBL:BT012145EMBL:CP002685EnsemblPlants:AT2G44370EnsemblPlants:AT2G44370.1
entrez:819044GeneID:819044GO:GO:0047134Gramene:AT2G44370.1
hmmpanther:PTHR13871hmmpanther:PTHR13871:SF42HOGENOM:HOG000093099InterPro:IPR004146
KEGG:ath:AT2G44370ncoils:CoilOMA:IELHMEMPfam:PF03107
Pfam:PF07649PhylomeDB:O64871PIR:T02392Proteomes:UP000006548
RefSeq:NP_181965.1SMR:O64871STRING:3702.AT2G44370.1SUPFAM:SSF57889
TAIR:AT2G44370UniGene:At.36770UniProt:O64871
Coordinates (TAIR10) chr2:-:18322102..18322854
Molecular Weight (calculated) 28023.10 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.61
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MAARKPSVRH PSHNHPLRSH KAQVEEEIIC SGCDLDLIGA AFKCTKSECD YFLHKSCFEL PRETRHKAHP DHPLILLYSP PYESTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSMPESV EREGHAHPLT LLYRSPYQNG LIFNCDVCQE TVPDNLWSYY CKECDYGTHL HSCAVEEEEA EEEEPKRGGG SARGNTKSGG
201: NKGGRGSAAS ELAAMLEAQR EMEKMQIELH MEMQRAKIAK KARKACLKLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)