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AT2G27660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.931
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G44400.1); Has 12415 Blast hits to 4315 proteins in 441 species: Archae - 16; Bacteria - 8002; Metazoa - 1069; Fungi - 491; Plants - 2227; Viruses - 23; Other Eukaryotes - 587 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYDDeggNOG:ENOG410YY12EMBL:AC005824EMBL:CP002685
EnsemblPlants:AT2G27660EnsemblPlants:AT2G27660.1entrez:817312GeneID:817312
GO:GO:0008270GO:GO:0047134Gramene:AT2G27660.1hmmpanther:PTHR13871
hmmpanther:PTHR13871:SF49InterPro:IPR004146KEGG:ath:AT2G27660OMA:DIHALCA
Pfam:PF03107Pfam:PF07649PIR:D84675Proteomes:UP000006548
RefSeq:NP_180334.1SMR:Q9ZUW8STRING:3702.AT2G27660.1SUPFAM:SSF57889
TAIR:AT2G27660UniGene:At.38732UniGene:At.74082UniProt:Q9ZUW8
Coordinates (TAIR10) chr2:-:11798694..11800850
Molecular Weight (calculated) 76568.50 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.81
Length 718 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKPTTQNNS FINHFSHPHR LQLTPATSSP PCSACKLTGG NGRVYSCRPC NFSLHESCSK MKQVITHPSH PSHTLSLLVA PVYDGGYFNC DGCGIHGTGF
101: SYQCSVCDFD IHALCAYKPL SIIHKSHPQH NLKLAFQSPY GANKGFSCDI CRKIGKNQWL YRCIPCEFDA HVGCITGPNP HLLQHSTSAP NPHTHHAGHP
201: QHQNSLPVPN QGSNRVRPMP MTRPNRTINP NRPIAQNAAV NGPRRQNNNL GYNAQVGPNG PNELTGQGSM DGSGYNGSAS ATNKEFDVDV DVDVDVDVDV
301: DVDVEVEYEG DVYVEEANDE GEDVDGNDEG EDVDGNGLEI VACVDNLSVA YSESDFGSSS DARSQCNDLS DADLYPLSLD NTQGPRPVRM NQGSGGGRKK
401: NTNQNGQASR SKKIVGNGPR GGLQGSNSPI QSPRGPQTRR VQNVRNNPTR GRGGAVSVRV NRPRDPSAFI APQGFNGPSG GPSNAIDSGA NNDNYNEVEG
501: TDVYVGEDNV GYEESYGGGD GDCDFEVGGD FGDEGYDQSY DDNYGENDFE SYSDITGGSE SMYEDGESYG TMNDSQYSGF NEEPNNQYAP MVGPVGGPGM
601: NNQNQYGQNG RPRNVGMYGR GGTNMNRYGN VNQGANRMQP RTMGGRPLQY RPNGRPNMAN GGVPNGPLGL GTPMLMNTMV QGLCQSFGMN MLIGGGGDAN
701: GGAGDGGGGG FFGGETEF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)