AT1G51860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: root hair specific 6 (TAIR:AT1G51880.1); Has 130458 Blast hits to 118907 proteins in 4509 species: Archae - 103; Bacteria - 13378; Metazoa - 43517; Fungi - 9721; Plants - 46311; Viruses - 360; Other Eukaryotes - 17068 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:19257634..19261479 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 99239.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 890 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKSLHWFLHL LIIAFTVLRS VEAQNQAGFI SLDCGLVPKE TTYTEKSTNI TYKSDVDYID SGLVGKINDA YKTQFQQQVW AVRSFPVGQR NCYNVNLTAN 101: NKYLIRGTFV YGNYDGLNQF PSFDLHIGPN KWSSVKILGV TNTSMHEIIH VVPQDSLEVC LVKTGPTTPF ISSLEVRPLN NESYLTQSGS LMLFARVYFP 201: SSSSSFIRYD EDIHDRVWNS FTDDETVWIS TDLPIDTSNS YDMPQSVMKT AAVPKNASEP WLLWWTLDEN TAQSYVYMHF AEVQNLTANE TREFNITYNG 301: GLRWFSYLRP PNLSISTIFN PRAVSSSNGI FNFTFAMTGN STLPPLLNAL EIYTVVDILQ LETNKDEVSA MMNIKETYGL SKKISWQGDP CAPQLYRWEG 401: LNCSYPDSEG SRIISLNLNG SELTGSITSD ISKLTLLTVL DLSNNDLSGD IPTFFAEMKS LKLINLSGNP NLNLTAIPDS LQQRVNSKSL TLILGENLTL 501: TPKKESKKVP MVAIAASVAG VFALLVILAI FFVIKRKNVK AHKSPGPPPL VTPGIVKSET RSSNPSIITR ERKITYPEVL KMTNNFERVL GKGGFGTVYH 601: GNLDGAEVAV KMLSHSSAQG YKEFKAEVEL LLRVHHRHLV GLVGYCDDGD NLALIYEYMA NGDLRENMSG KRGGNVLTWE NRMQIAVEAA QGLEYLHNGC 701: RPPMVHRDVK TTNILLNERC GAKLADFGLS RSFPIDGECH VSTVVAGTPG YLDPEYYRTN WLSEKSDVYS FGVVLLEIVT NQPVIDKTRE RPHINDWVGF 801: MLTKGDIKSI VDPKLMGDYD TNGAWKIVEL ALACVNPSSN RRPTMAHVVM ELNDCVALEN ARRQGSEEMY SMGSVDYSLS STSDFAPGAR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)