AT4G00700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.591 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (TAIR:AT4G11610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:286260..289369 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114685.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.78 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||
| Length | 1006 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSNIKLGVEV ISAQGLLQRD KHNSCSPFVE LKFDNQIFRA TTKHNDPNPV WHECFYFVVS DPSVLSTRTL EAHVYSYQNE FDAKPFLGKV RVNGTSFVPR 0101: SEAAPFNYPL EKRSVFSRAR GELCLRVFIT DDPSVTPSVP TPVPESPQAY SPSPRKEHVK SLITADASMA TDERRELKPK TRTFHNSAPL VKQQPMMNYG 0201: IHEMRAAPMP PRVVQVNGPG PSLHQLPPDF SVKETSPLLG GGRIVGGRVV RGTERPTSGT YDLVEEMKFL YVRVVKARDL PNKDLTGSLD PYVVVKIGNF 0301: KGVTTHFNKN TDPEWNQVFA FAKDNLQSNF LEVMVKDKDI LLDDFVGIVK FDLREVQSRV PPDSPLAPQW YRLENKRGEK KNYEIMLAVW SGTQADEAFG 0401: DATFSDSLVD SDSSNIISAN LRSKVYHSPR LWYLRVQILE AQDVIIVSDK SRVPEVFVRV KVGNQMLRTK FPQRSNNPKW GDEFTFVVAE PFEDNLVLSV 0501: EDHTAPNRDE PVGKAVILMN DIEKRIDDKP FHDRWVHLED SISDAMDVDK AKKVKFATRL RYKAVLDGGY HVFDESMYNS SDLRPSSRKL WKPAIGVLEL 0601: GILNANVFHS MKTREGKGTS DTYVVAKYGH KWVRSRTVIN SMNPKYNEQY TWEVFDPATV LTICVFDNAH FAAGDGGNKR DQPIGKVRIR LSTLQTGRVY 0701: THAYPLLVLQ PTGLKKRGEL HLAVRFTCTS VSSMLMKYTK PLLPKMHYIL PLSTNQQEAL KMQAINIIIV RLGRSEPPLR REVVDYLTDW KSQLFSMRRS 0801: KANFNRFTTV FSGALSVWKW MEQVCTWKTP VTTALVHVLY TMLVTFPEMI LPTVFLYMAV IGMWNYRFKP RFPPHMDAKL SYADNVNSDE LDEEFDTFPT 0901: VRAPDIVKMR YDRLRSVAGK VQSVAGDIAA QGERVQALLS WRDPRATAIF VTFCFIIAMA LYITPFKLVA LLSGYYFMRH PKLRHRIPSA PVNFFRRLPA 1001: MTDSML |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)