AT1G13830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Carbohydrate-binding X8 domain superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G03505.1); Has 1996 Blast hits to 1758 proteins in 218 species: Archae - 6; Bacteria - 230; Metazoa - 175; Fungi - 81; Plants - 1344; Viruses - 45; Other Eukaryotes - 115 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4739999..4740926 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20382.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.47 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||
| Length | 197 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKVLLGLLLL LSLTNSSSAI YCLCKDGIGD TELQTSIDYA CGTLADCNPI HDKGTCYQPD TIKSHCDWAV NSYFQNAAQV PGSCNFSGTA TTNPNPPSNL 101: ANGCIYPSSP SSTRSPPSTT PPTGTTPTNG TTPFPGTPFP GTPFPGTPPV FGPTGVFNPS NPGSGASSLG TSSVFTLCFS LLAFLWGSDV RFGFSHV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)