suba logo
AT5G07680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 80
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 80 (NAC080); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 100 (TAIR:AT5G61430.1); Has 3092 Blast hits to 3083 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3092; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:830661eggNOG:ENOG410IIWYeggNOG:ENOG410Y9QZEMBL:AB010070
EMBL:AK228027EMBL:AY087700EMBL:BT006419EMBL:CP002688
EMBL:EU550240EMBL:EU550241EMBL:EU550243EMBL:EU550244
EMBL:EU550245EMBL:EU550247EMBL:EU550248EMBL:EU550249
EMBL:EU550250EMBL:EU550251EMBL:EU550252EMBL:EU550253
EMBL:EU550254EMBL:EU550255EMBL:EU550256EMBL:EU550257
EMBL:EU550258EMBL:EU550259EMBL:EU550260EMBL:EU550261
EMBL:EU550262EMBL:EU550263EnsemblPlants:AT5G07680EnsemblPlants:AT5G07680.1
EnsemblPlants:AT5G07680.2entrez:830661ExpressionAtlas:Q9FLR3GeneID:830661
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
hmmpanther:PTHR31744hmmpanther:PTHR31744:SF7HOGENOM:HOG000237406InterPro:IPR003441
KEGG:ath:AT5G07680OMA:FHKTAGGPaxDb:Q9FLR3Pfam:PF02365
Pfscan:PS51005PhylomeDB:Q9FLR3PROSITE:PS51005ProteinModelPortal:Q9FLR3
Proteomes:UP000006548RefSeq:NP_568182.2RefSeq:NP_850789.1SMR:Q9FLR3
STRING:3702.AT5G07680.1SUPFAM:SSF101941TAIR:AT5G07680tair10-symbols:ANAC079
tair10-symbols:ANAC080tair10-symbols:ATNAC4tair10-symbols:NAC080UniGene:At.32689
UniProt:Q9FLR3
Coordinates (TAIR10) chr5:+:2436092..2437322
Molecular Weight (calculated) 37519.50 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.66
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: METFGVFHKE DDEQMDLPPG FRFHPTDEEL ITHYLHKKVL DLGFSAKAIG EVDLNKAEPW ELPYKAKIGE KEWYFFCVRD RKYPTGLRTN RATQAGYWKA
101: TGKDKEIFRG KSLVGMKKTL VFYRGRAPKG QKTNWVMHEY RLDGKLSAHN LPKTAKNEWV ICRVFHKTAG GKKIPISTLI RIGSYGTGSS LPPLTDSSPY
201: NDKTKTEPVY VPCFSNQAET RGTILNCFSN PSLSSIQPDF LQMIPLYQPQ SLNISESSNP VLTQEQSVLQ AMMENNRRQN FKTLSISQET GVSNTDNSSV
301: FEFGRKRFDH QEVPSPSSGP VDLEPFWNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)