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AT2G28110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings.
Computational
Description (TAIR10)
FRAGILE FIBER 8 (FRA8); CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G28110-MONOMEReggNOG:ENOG410XTFHeggNOG:KOG1021EMBL:KJ138894
EnsemblPlants:AT2G28110EnsemblPlants:AT2G28110.1entrez:817357ExpressionAtlas:W8Q712
GeneID:817357GO:GO:0010417GO:GO:0016021GO:GO:0016740
Gramene:AT2G28110.1hmmpanther:PTHR11062hmmpanther:PTHR11062:SF46InterPro:IPR004263
KEGG:ath:AT2G28110OMA:AMFESKIPaxDb:W8Q712Pfam:PF03016
Pfam:Q9ZUV3PhylomeDB:W8Q712ProteinModelPortal:W8Q712RefSeq:NP_850113.2
STRING:3702.AT2G28110.1tair10-symbols:FRA8tair10-symbols:IRX7TMHMM:TMhelix
UniGene:At.38661UniProt:Q9ZUV3UniProt:W8Q712
Coordinates (TAIR10) chr2:-:11978024..11979641
Molecular Weight (calculated) 51696.90 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.26
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTHKHRRTE KNLCFKQYYK WILCFILTLY FFASFFVDHD QDHRSSTSIS KHLLTNHKPK LFASRAMFES KIHDHKLGFT SQQPNIKTDV FNNLKIYVYD
101: LPSKFNKDWL ANDRCTNHLF AAEVALHKAF LSLEGDVRTE DPYEADFFFV PVYVSCNFST INGFPAIGHA RSLINDAIKL VSTQYPFWNR TSGSDHVFTA
201: THDFGSCFHT MEDRAIADGV PIFLRNSIIL QTFGVTFNHP CQEVENVVIP PYISPESLHK TQKNIPVTKE RDIWVFFRGK MELHPKNISG RFYSKRVRTN
301: IWRSYGGDRR FYLQRQRFAG YQSEIARSVF CLCPLGWAPW SPRLVESVAL GCVPVIIADG IRLPFPSTVR WPDISLTVAE RDVGKLGDIL EHVAATNLSV
401: IQRNLEDPSV RRALMFNVPS REGDATWQVL EALSKKLNRS VRRSNSFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)