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AT1G23040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G70990.1); Has 25412 Blast hits to 10574 proteins in 716 species: Archae - 40; Bacteria - 2873; Metazoa - 9053; Fungi - 1818; Plants - 6806; Viruses - 1343; Other Eukaryotes - 3479 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J5ZWeggNOG:ENOG41117Z7EMBL:AC002311EMBL:AF000657
EMBL:AK229476EMBL:BT025504EMBL:CP002684EnsemblPlants:AT1G23040
EnsemblPlants:AT1G23040.1entrez:838912GeneID:838912GO:GO:0016021
GO:GO:0031225Gramene:AT1G23040.1hmmpanther:PTHR35094hmmpanther:PTHR35094:SF1
HOGENOM:HOG000235046KEGG:ath:AT1G23040OMA:VIFTVMMPhylomeDB:O23120
PIR:E86364Proteomes:UP000006548RefSeq:NP_564187.1TAIR:AT1G23040
TMHMM:TMhelixUniGene:At.10436UniGene:At.74290UniProt:O23120
Coordinates (TAIR10) chr1:+:8165025..8165459
Molecular Weight (calculated) 15008.40 Da
IEP (calculated) 7.83
GRAVY (calculated) 0.04
Length 144 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGNSHRRGS DVIFTVMMIA LLTCPTLING SSSSDASLEA RKLDEVDPIK CSPSCIQNPP PPSPPPPSPP PPACPPPPAL PPPPPKKVSS YCPPPPPANF
101: LYITGPPGNL YPVDEQFGAA AGKSFMVVKL SGLIAFGIMA FLIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)