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AT1G74020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28611809 (2017): cytosol
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:27122571 (2016): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22430844 (2012): Golgi
  • PMID:22318864 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : strictosidine synthase 2
Curator
Summary (TAIR10)
Encodes AtSS-2 strictosidine synthase.
Computational
Description (TAIR10)
strictosidine synthase 2 (SS2); INVOLVED IN: response to jasmonic acid stimulus, response to wounding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT1G74010.1); Has 965 Blast hits to 955 proteins in 193 species: Archae - 1; Bacteria - 188; Metazoa - 217; Fungi - 5; Plants - 466; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G74020-MONOMEREC:4.3.3.2eggNOG:COG3386eggNOG:KOG1520
EMBL:AC016662EMBL:AY034970EMBL:AY062976EMBL:CP002684
EMBL:U43713EMBL:U43945EnsemblPlants:AT1G74020EnsemblPlants:AT1G74020.1
entrez:843740Gene3D:2.120.10.30GeneID:843740Genevisible:P94111
GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0005886
GO:GO:0009058GO:GO:0009506GO:GO:0009611GO:GO:0009753
GO:GO:0009820GO:GO:0016829GO:GO:0051365Gramene:AT1G74020.1
hmmpanther:PTHR10426hmmpanther:PTHR10426:SF39HOGENOM:HOG000223915InterPro:IPR004141
InterPro:IPR011042InterPro:IPR018119KEGG:ath:AT1G74020KO:K01757
OMA:NLYIGTLPANTHER:PTHR10426PaxDb:P94111Pfam:P94111
Pfam:PF03088PhylomeDB:P94111PIR:A96768PRIDE:P94111
PRO:PR:P94111ProteinModelPortal:P94111Proteomes:UP000006548RefSeq:NP_177542.1
SMR:P94111STRING:3702.AT1G74020.1SUPFAM:SSF63829TAIR:AT1G74020
tair10-symbols:SS2UniGene:At.24431UniGene:At.74858UniPathway:UPA00311
UniProt:P94111
Coordinates (TAIR10) chr1:-:27835289..27837277
Molecular Weight (calculated) 35295.00 Da
IEP (calculated) 5.43
GRAVY (calculated) 0.07
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSFCSMISL LLLLSLSSAV FSDDASFQKL PVPETRSGPE AFAFDSTGKG FYTGVSGGKI LKYLPETGYV DFAQITESSN SSWCDGTIGT ALAGRCGRPA
101: GIAFNEKTGD LYVADAPLGL HVISPAGGLA TKITDSVDGK PFKFLDGLDV DPTTGVVYFT SFSSRFSPIQ VLIALGLKDA TGKLYKYDPS TKVVTVLMEG
201: LSGSAGCAVS SDGSFVLVSQ FTKSNIKRYW IKGPKAGSSE DFTNSVSNPD NIKRIGSTGN FWVASVVNKI IVPTNPSAVK VNSNGEVLQT IPLKDKFGDT
301: LLSEVNEFEG NLYIGTLTGP FAGILKLEKG SCPAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)