AT4G02940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.704 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : oxidoreductase, 2OG-Fe(II) oxygenase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to karrikin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: oxidoreductase, 2OG-Fe(II) oxygenase family protein (TAIR:AT2G48080.1); Has 217 Blast hits to 213 proteins in 52 species: Archae - 0; Bacteria - 14; Metazoa - 24; Fungi - 16; Plants - 131; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:1306658..1310699 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62690.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||
| Length | 569 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTIAAAPARQ TDRSATGFNP AYVTTAKAVS VPVQVPPATV VSEGLGKDAL ISWFRGEFAA ANAIIDAMCS HLRIAEEAVS GSEYEAVFAA IHRRRLNWIP 101: VLQMQKYHSI AEVAIELQKV AAKKAEDLKQ KKTEEEAEED LKEVVATEEE EVKKECFNGE KVTENDVNGD VEDVEDDSPT SDITDSGSHQ DVHQTVVADT 201: AHQIICHSHE DCDARSCEIK PIKGFQAKEQ VKGHTVNVVK GLKLYEELLK EDEISKLLDF VAELREAGIN GKLAGESFIL FNKQIKGNKR ELIQLGVPIF 301: GHVKADENSN DTNNSVNIEP IPPLLESVID HFVTWRLIPE YKRPNGCVIN FFEEGEYSQP FLKPPHLEQP ISTLVLSEST MAYGRILSSD NEGNFRGPLT 401: LSLKQGSLLV MRGNSADMAR HVMCPSQNKR VSITFFRIRP DTYHNHSQPN SPRNDGVMTM WQPYQMTPTP FLNGYDHSID MMPKLGVLRP PMVMMAPPPV 501: QPMILPSPNV MGTGGGTGVF LPWASVNSSR KHVKHLPPRA QKKRLLPLPP AASSSPAGGS TSEPVITVG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)