suba logo
AT1G79410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18710496 (2008): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : organic cation/carnitine transporter5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
organic cation/carnitine transporter5 (5-Oct); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter 6 (TAIR:AT1G16370.1); Has 11548 Blast hits to 11506 proteins in 1434 species: Archae - 261; Bacteria - 5062; Metazoa - 3508; Fungi - 1334; Plants - 912; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0477eggNOG:KOG0255EMBL:AC007202EMBL:AY125523
EMBL:CP002684EnsemblPlants:AT1G79410EnsemblPlants:AT1G79410.1entrez:844279
GeneID:844279Genevisible:Q9SAK7GO:GO:0005524GO:GO:0006811
GO:GO:0009705GO:GO:0016021GO:GO:0022891GO:GO:0042631
GO:GO:0070417GO:GO:0071472Gramene:AT1G79410.1hmmpanther:PTHR24064
hmmpanther:PTHR24064:SF172HOGENOM:HOG000234568InParanoid:Q9SAK7InterPro:IPR005828
InterPro:IPR020846iPTMnet:Q9SAK7KEGG:ath:AT1G79410OMA:IYFFALE
PaxDb:Q9SAK7Pfam:PF00083Pfam:Q9SAK7Pfscan:PS50850
PhylomeDB:Q9SAK7PIR:B96825PRIDE:Q9SAK7PRO:PR:Q9SAK7
PROSITE:PS50850ProteinModelPortal:Q9SAK7Proteomes:UP000006548Reactome:R-ATH-112311
Reactome:R-ATH-181430Reactome:R-ATH-2161517Reactome:R-ATH-442660Reactome:R-ATH-549127
RefSeq:NP_178059.1STRING:3702.AT1G79410.1SUPFAM:SSF103473TAIR:AT1G79410
tair10-symbols:5-Octtair10-symbols:AtOCT5TMHMM:TMhelixUniGene:At.34115
UniGene:At.70474UniProt:Q9SAK7
Coordinates (TAIR10) chr1:-:29868037..29869584
Molecular Weight (calculated) 57154.20 Da
IEP (calculated) 7.96
GRAVY (calculated) 0.46
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSLAPLLP THIEEDEDTS SPLTFDKILE KSLSDFGFSQ FLQIVLVGLA LTFDSQQIFI TVFTDAYPTW HCLDHTICNP ATTDICKIPR SAWDWDGGFK
101: GKSVISEFDL ECSSSFLRSL PSSTFYVGSI VGGVVLAMIP DGSLGRKQLL FFSSFAMSLT GISIFLSSNI WIYSFLKFVI GFARSQTGTY ALVLISERIS
201: TKWRPRATMV PFTLFVLGFM SLSGIAYLVR HASWKVLYLC TSIPAGIHSI FIYFFALESP RWLHLEGKNK EAIEVLKRIS PANRGYLESV SSRLRPKETL
301: EQTSSYSIKD LFIIKWAFRR VTLVMIIMFG LGMSYYGVPL AVRDIKVNIY MSEALNAMVE LPTFVVTPIL LEQFSRRSSV LVNCLIGGAS GVLCFVMSLY
401: GRTKIAFALE LGSFFCARIG FNLMAIYLVE LFPTCVRNSA TMMLRQALVV GGACCPLIAS LGRNVPSLSF AVFGFAMSGL GLFALLLPET KGLSLCDTME
501: EQEQRDQALK TSHSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)