suba logo
AT2G17500.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.783
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin efflux carrier family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT5G65980.1); Has 663 Blast hits to 641 proteins in 145 species: Archae - 10; Bacteria - 47; Metazoa - 0; Fungi - 231; Plants - 323; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0679eggNOG:KOG2722EMBL:AC007584EMBL:AK226321
EMBL:CP002685EnsemblPlants:AT2G17500EnsemblPlants:AT2G17500.1EnsemblPlants:AT2G17500.2
EnsemblPlants:AT2G17500.3EnsemblPlants:AT2G17500.4entrez:816256GeneID:816256
GO:GO:0016021GO:GO:0055085Gramene:AT2G17500.1Gramene:AT2G17500.2
Gramene:AT2G17500.3Gramene:AT2G17500.4hmmpanther:PTHR31651hmmpanther:PTHR31651:SF3
InterPro:IPR004776KEGG:ath:AT2G17500OMA:VEARNSMPfam:PF03547
PhylomeDB:Q9SHL8PIR:H84552Proteomes:UP000006548RefSeq:NP_001031363.1
RefSeq:NP_565417.1RefSeq:NP_849964.1RefSeq:NP_973479.1STRING:3702.AT2G17500.1
TAIR:AT2G17500TMHMM:TMhelixUniGene:At.14584UniGene:At.40137
UniProt:Q9SHL8
Coordinates (TAIR10) chr2:+:7607063..7608990
Molecular Weight (calculated) 43396.40 Da
IEP (calculated) 6.89
GRAVY (calculated) 0.67
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFWSLLEVA SMPVIQVLFM SLVGAFMASD RCKLFPVEAR NSMNKVVFVL FAPALMFANL AQTVTLEDII SWWFMPVNMG LTFLIGGLLG WLVVKILKPP
101: PYLEGLIVAT CSAGNMGNLP IILVPAICDE DKSPFGNRSV CRTVGLSYAS FSMALGGFYI WTYTFRLIKG SAMKVQAIEE SEKIAIKSSN SDLEADHKTH
201: LLGAPEDKEN KVVKEKTGFW RKGVDFLHEI LEELLAPPTL GAIIGFIFGA VRWLRNLIIG DDAPLRIVQS TAKLLGDGTI PCMTIILGGN LIQGLRSSAV
301: KPMVVLGIVC VRYIAMPIIG IGIVLTAANL GFLPADPLFQ YVLMLQFTLP PAMNIGTMTQ LYNVAQDECS VLMLWTYLVA ILALTVWSTI FLHLLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)