suba logo
AT2G04160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24665109 (2014): extracellular region plant-type cell wall
  • PMID:16356755 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Subtilisin-like serine endopeptidase family protein
Curator
Summary (TAIR10)
isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell.
Computational
Description (TAIR10)
AUXIN-INDUCED IN ROOT CULTURES 3 (AIR3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, response to auxin stimulus, lateral root morphogenesis; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G59810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G04160-MONOMEREC:3.4.21.-eggNOG:COG1404eggNOG:ENOG410IJ2D
EMBL:AC007178EMBL:AC007293EMBL:AF098632EMBL:AY045647
EMBL:AY058235EMBL:CP002685EnsemblPlants:AT2G04160EnsemblPlants:AT2G04160.1
entrez:814953Gene3D:3.40.50.200GeneID:814953Genevisible:Q9ZSP5
GO:GO:0004252GO:GO:0005576GO:GO:0005618GO:GO:0009733
GO:GO:0010102Gramene:AT2G04160.1hmmpanther:PTHR10795hmmpanther:PTHR10795:SF423
HOGENOM:HOG000238262InParanoid:Q9ZSP5InterPro:IPR000209InterPro:IPR010259
InterPro:IPR015500InterPro:IPR023828iPTMnet:Q9ZSP5KEGG:ath:AT2G04160
MEROPS:S08.119OMA:CSLRYNAPANTHER:PTHR10795PaxDb:Q9ZSP5
Pfam:PF00082Pfam:PF02225Pfam:PF05922Pfam:Q9ZSP5
PhylomeDB:Q9ZSP5PRIDE:Q9ZSP5PRINTS:PR00723PRO:PR:Q9ZSP5
PROSITE:PS00138ProteinModelPortal:Q9ZSP5Proteomes:UP000006548RefSeq:NP_565309.2
scanprosite:PS00138SMR:Q9ZSP5STRING:3702.AT2G04160.1SUPFAM:SSF52743
TAIR:AT2G04160tair10-symbols:AIR3UniGene:At.19878UniProt:Q9ZSP5
Coordinates (TAIR10) chr2:-:1401450..1407694
Molecular Weight (calculated) 82878.10 Da
IEP (calculated) 9.87
GRAVY (calculated) -0.10
Length 772 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLTHNFSFL LLLLLVHMSS KHILASKDSS SYVVYFGAHS HVGEITEDAM DRVKETHYDF LGSFTGSRER ATDAIFYSYT KHINGFAAHL DHDLAYEISK
101: HPEVVSVFPN KALKLHTTRS WDFLGLEHNS YVPSSSIWRK ARFGEDTIIA NLDTGVWPES KSFRDEGLGP IPSRWKGICQ NQKDATFHCN RKLIGARYFN
201: KGYAAAVGHL NSSFDSPRDL DGHGSHTLST AAGDFVPGVS IFGQGNGTAK GGSPRARVAA YKVCWPPVKG NECYDADVLA AFDAAIHDGA DVISVSLGGE
301: PTSFFNDSVA IGSFHAAKKR IVVVCSAGNS GPADSTVSNV APWQITVGAS TMDREFASNL VLGNGKHYKG QSLSSTALPH AKFYPIMASV NAKAKNASAL
401: DAQLCKLGSL DPIKTKGKIL VCLRGQNGRV EKGRAVALGG GIGMVLENTY VTGNDLLADP HVLPATQLTS KDSFAVSRYI SQTKKPIAHI TPSRTDLGLK
501: PAPVMASFSS KGPSIVAPQI LKPDITAPGV SVIAAYTGAV SPTNEQFDPR RLLFNAISGT SMSCPHISGI AGLLKTRYPS WSPAAIRSAI MTTATIMDDI
601: PGPIQNATNM KATPFSFGAG HVQPNLAVNP GLVYDLGIKD YLNFLCSLGY NASQISVFSG NNFTCSSPKI SLVNLNYPSI TVPNLTSSKV TVSRTVKNVG
701: RPSMYTVKVN NPQGVYVAVK PTSLNFTKVG EQKTFKVILV KSKGNVAKGY VFGELVWSDK KHRVRSPIVV KL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)