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AT5G02260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Predictors External Curations
SwissProt : extracellular 16381842
SwissProt : plasma membrane 16381842
TAIR : plastid 15028209
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A9
Curator
Summary (TAIR10)
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin A9 (EXPA9); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: Barwin-like endoglucanases superfamily protein (TAIR:AT2G37640.1); Has 2170 Blast hits to 2166 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 2091; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG2HeggNOG:ENOG410YCRVEMBL:AL162874EMBL:AY054586
EMBL:AY064685EMBL:AY086085EMBL:CP002688EnsemblPlants:AT5G02260
EnsemblPlants:AT5G02260.1entrez:831736Gene3D:2.40.40.10Gene3D:2.60.40.760
GeneID:831736Genevisible:Q9LZ99GO:GO:0005576GO:GO:0005618
GO:GO:0009507GO:GO:0009664GO:GO:0016020Gramene:AT5G02260.1
hmmpanther:PTHR31867hmmpanther:PTHR31867:SF5HOGENOM:HOG000220793InParanoid:Q9LZ99
InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118
InterPro:IPR009009KEGG:ath:AT5G02260OMA:KGTNTQWPaxDb:Q9LZ99
Pfam:PF01357Pfam:PF03330Pfam:Q9LZ99Pfscan:PS50842
Pfscan:PS50843PhylomeDB:Q9LZ99PIR:T48247PRIDE:Q9LZ99
PRINTS:PR01225PRINTS:PR01226PRO:PR:Q9LZ99PROSITE:PS50842
PROSITE:PS50843ProteinModelPortal:Q9LZ99Proteomes:UP000006548RefSeq:NP_195846.1
SMART:SM00837SMR:Q9LZ99STRING:3702.AT5G02260.1SUPFAM:SSF49590
SUPFAM:SSF50685TAIR:AT5G02260tair10-symbols:ATEXP9tair10-symbols:ATEXPA9
tair10-symbols:ATHEXP ALPHA 1.10tair10-symbols:EXP9tair10-symbols:EXPA9UniGene:At.24609
UniProt:Q9LZ99
Coordinates (TAIR10) chr5:+:463224..464840
Molecular Weight (calculated) 27751.10 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.05
Length 258 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAKVITFMA VMVVTAFTAN AKIPGVYTGG PWINAHATFY GEADASGTMG GACGYGNLYS QGYGVNTAAL STALFNNGLS CGSCFELKCI NDPGWCLPGN
101: PSILITATNF CPPNFNQASD NGGWCNPPRE HFDLAMPMFL SIAKYKAGIV PVSYRRIPCR KKGGIRFTIN GFKYFNLVLV TNVAGAGDVI KVSVKGSNTQ
201: WLDLSRNWGQ NWQSNALLVG QSLSFRVKTS DGRSSTSNNI APSNWQFGQT YSGKNFRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)