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AT5G56320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A14
Curator
Summary (TAIR10)
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin A14 (EXPA14); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root, stamen; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW98eggNOG:ENOG4110559EMBL:AB009049EMBL:AK230274
EMBL:AY088179EMBL:CP002688EnsemblPlants:AT5G56320EnsemblPlants:AT5G56320.1
entrez:835731Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:835731
Genevisible:Q9FMA0GO:GO:0005576GO:GO:0005618GO:GO:0009664
GO:GO:0016020Gramene:AT5G56320.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF11
HOGENOM:HOG000220793InParanoid:Q9FMA0InterPro:IPR002963InterPro:IPR007112
InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT5G56320
OMA:NNATPRNPaxDb:Q9FMA0Pfam:PF01357Pfam:PF03330
Pfam:Q9FMA0Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q9FMA0
PRIDE:Q9FMA0PRINTS:PR01225PRINTS:PR01226PRO:PR:Q9FMA0
PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q9FMA0Proteomes:UP000006548
RefSeq:NP_200443.1SMART:SM00837SMR:Q9FMA0STRING:3702.AT5G56320.1
SUPFAM:SSF49590SUPFAM:SSF50685TAIR:AT5G56320tair10-symbols:ATEXP14
tair10-symbols:ATEXPA14tair10-symbols:ATHEXP ALPHA 1.5tair10-symbols:EXP14tair10-symbols:EXPA14
UniGene:At.29394UniProt:Q9FMA0
Coordinates (TAIR10) chr5:+:22808854..22809906
Molecular Weight (calculated) 27735.00 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.21
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFFGKMIIS LSLMMMIMWK SVDGYSSGWV NARATFYGGA DASGTMGGAC GYGNLYSQGY GTNTAALSTA LFNGGQSCGA CFQIKCVDDP KWCIGGTITV
101: TGTNFCPPNF AQANNAGGWC NPPQHHFDLA QPIFLRIAQY KAGVVPVQYR RVACRRKGGI RFTINGHSYF NLVLITNVAG AGDVISVSIK GTNTRWQSMS
201: RNWGQNWQSN AKLDGQALSF KVTTSDGRTV ISNNATPRNW SFGQTYTGKQ FRAQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)