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AT5G10130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular space, endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041), Allergen Ole e 1, conserved site (InterPro:IPR006040); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G08685.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNVKeggNOG:ENOG411144FEMBL:AL356332EMBL:BT010846
EMBL:BT012613EMBL:CP002688EnsemblPlants:AT5G10130EnsemblPlants:AT5G10130.1
entrez:830877GeneID:830877Genevisible:Q9LX15GO:GO:0005615
Gramene:AT5G10130.1hmmpanther:PTHR31614hmmpanther:PTHR31614:SF5HOGENOM:HOG000240768
InParanoid:Q9LX15InterPro:IPR006040iPTMnet:Q9LX15KEGG:ath:AT5G10130
OMA:ARVRIVCPaxDb:Q9LX15Pfam:PF01190Pfam:Q9LX15
PhylomeDB:Q9LX15PIR:T50017PRIDE:Q9LX15PRO:PR:Q9LX15
PROSITE:PS00925Proteomes:UP000006548RefSeq:NP_196575.1scanprosite:PS00925
STRING:3702.AT5G10130.1TAIR:AT5G10130TMHMM:TMhelixUniGene:At.32413
UniProt:Q9LX15
Coordinates (TAIR10) chr5:-:3171551..3172428
Molecular Weight (calculated) 17819.70 Da
IEP (calculated) 9.12
GRAVY (calculated) 0.04
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKSFVPLIA VLCVLVLPLA AMAVGTPFHI EGSVYCDTCR FGFETIATQY IRGARVRIVC KDRVTLKSEL VGVAVTGPDG KYKVAVRGDR QDQQCLAELV
101: HSPLSRCQEA DPGRSTATVI LTRSNGAAST RHYANAMGFF RDEPLRGCAA LRKRYLADGD NRAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)