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AT1G50060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT1G50050.1); Has 2790 Blast hits to 2723 proteins in 351 species: Archae - 0; Bacteria - 60; Metazoa - 1420; Fungi - 326; Plants - 897; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2340eggNOG:KOG3017EMBL:AC015445EMBL:CP002684
EnsemblPlants:AT1G50060EnsemblPlants:AT1G50060.1entrez:841430Gene3D:3.40.33.10
GeneID:841430Gramene:AT1G50060.1hmmpanther:PTHR10334hmmpanther:PTHR10334:SF223
HOGENOM:HOG000036879InterPro:IPR001283InterPro:IPR002413InterPro:IPR014044
KEGG:ath:AT1G50060KO:K13449OMA:SNVLICFPANTHER:PTHR10334
Pfam:PF00188PhylomeDB:Q9LPM7PIR:B96537PRINTS:PR00837
PRINTS:PR00838Proteomes:UP000006548RefSeq:NP_175428.1SMART:SM00198
SMR:Q9LPM7STRING:3702.AT1G50060.1SUPFAM:SSF55797TAIR:AT1G50060
UniGene:At.38103UniProt:Q9LPM7
Coordinates (TAIR10) chr1:+:18551186..18552446
Molecular Weight (calculated) 18008.00 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.22
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTFKTPFLV IVAISFLVVA TNAQNTPQDY LNSHNTARAQ VGVPNVVWDT TLAAYALNYS NFRKADCNLV HSNGPYGENL AKGSSSSFSA ISAVKLWVDE
101: KPYYSYAYNN CTGGKQCLHY TQVVWRDSVK IGCARVQCTN TWWFVSCNYN SPGNWVGEYP Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)