AT3G19430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : late embryogenesis abundant protein-related / LEA protein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
late embryogenesis abundant protein-related / LEA protein-related; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G60520.1); Has 407828 Blast hits to 124211 proteins in 3571 species: Archae - 1492; Bacteria - 100012; Metazoa - 145570; Fungi - 58500; Plants - 39690; Viruses - 10531; Other Eukaryotes - 52033 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6736382..6738330 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 58570.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.96 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADTPPGIAK NPSHATCKIK KYKHCYNLEH VCPKFCPDSC HVECASCKPI CGPPSPGDDG GGDDSGGDDG GYTPPAPVPP VSPPPPTPSV PSPTPPVSPP 101: PPTPTPSVPS PTPPVSPPPP TPTPSVPSPT PPVSPPPPTP TPSVPSPTPP VSPPPPTPTP SVPSPTPPVP TDPMPSPPPP VSPPPPTPTP SVPSPPDVTP 201: TPPTPSVPSP PDVTPTPPTP SVPSPPDVTP TPPTPPSVPT PSGSPPYVPP PSDEEEAAGA KRVRCKKQRS PCYGVEYTCP ADCPRSCQVD CVTCKPVCNC 301: DKPGSVCQDP RFIGGDGLTF YFHGKKDSNF CLISDPNLHI NAHFIGKRRA GMARDFTWVQ SIAILFGTHR LYVGALKTAT WDDSVDRIAV SFDGNVISLP 401: QLDGARWTSS PGVYPEVSVK RVNTDTNNLE VEVEGLLKIT ARVVPITMED SRIHGYDVKE DDCLAHLDLG FKFQDLSDNV DGVLGQTYRS NYVSRVKIGV 501: HMPVMGGDRE FQTTGLFAPD CSAARFTGNG DSNNGRSKLE LPEMSCASGL GGKGVVCKR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)