AT2G23630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SKU5 similar 16 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SKU5 similar 16 (sks16); FUNCTIONS IN: pectinesterase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 15 (TAIR:AT4G37160.1); Has 5309 Blast hits to 5276 proteins in 999 species: Archae - 6; Bacteria - 1673; Metazoa - 270; Fungi - 1945; Plants - 1254; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10052581..10055311 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61032.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKQKHLLLLG FLLAYCFSSV FVINAEDPYL FFTWTVTYGT RSPLGVPQQV ILINGQFPGP PIEGVTNNNI VVNVINKLDE PFLITWNGIK QRKMSWQDGV 101: LGTNCPIQPK SSWTYHFQLK DQIGTYAYFA STSMHRASGA FGALNVNQRS VIFVPYPKPD ADFTLLVSDW YKMGHKELQR RLDSSRALPP PDGLLINGAS 201: KGLVFTGQHG KIYRFRISNV GISTSINFRI QGHMMTLVEV EGSHTLQEVY ESLDIHVGQS VTVLVTLKAP VKDYFIVAST RFTKPILTTT GILSYQGSKI 301: RPSHPLPIGP TYHIHWSMKQ ARTIRLNLTA NAARPNPQGS FHYGTIPINR TFVLANGRAM INGKLRYTVN RVSYVNPATP LKLADWFNIP GVFNFKTIMN 401: IPTPGPSILG TSVFDVALHE YVEFVFQNNE GSIQSWHLDG TSAYVVGYGS GTWNMAKRRG YNLVDAVSRH TFQVYPMSWT SILVSLDNKG MWNLRSQIWS 501: RRYLGQELYV RVWNNEKSLY TESEPPVNVL FCGKAKHPRL I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)