AT1G52070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G52060.1); Has 1736 Blast hits to 822 proteins in 55 species: Archae - 0; Bacteria - 8; Metazoa - 31; Fungi - 2; Plants - 1691; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19365140..19366900 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34047.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.16 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 315 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVIIYIFLFL SSAIIDSTGL AKAQKLDAIG GKGGKQWDDG ADHDNVAKVY IRGGLEGIQY IKFDYVKDGK TIDASIHGVS GSGFTQTFEI DYQNSEYIVS 101: VDGYYDKSGT MQALEFKTNL KTSEVIGYPK GTTKFSLGGV NGKMVIGFHG SAGKVLNSIG AYLTTAPPTK SQLVGGLTGG EPWDDGSNYD GVKKISVTYI 201: STLIRSINVD YEKDGQVVTR YHGMKNGDTE EFVIDYPNEY LISVEGTYNI LPDDNVLVIR SLIFKTSKGR ISPTYGFVSG TKFVLESQGN AIVGFYGRDG 301: GAFDAIGVYF SPIPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)