AT5G60530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : late embryogenesis abundant protein-related / LEA protein-related | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G60520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24334197..24335685 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50087.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.93 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.04 | ||||||||||||||||||||||||||||
| Length | 439 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERRQSYVLV ALIGLLLLTD IVIAQSDGGK GNGNNGKGNE VQVDKGKGDN GKSNGNGPKD KEQEKKDKEK AAKDKKEKEK KDKEEKEKKD KERKEKEKKD 101: KLEKEKKDKE RKEKERKEKE RKAKEKKDKE ESEAAARYRI LSPLPTGQEQ AMCQGRGSCY YKTLVCPGEC PKRKPTKNKN TKGCFIDCTN KCEATCKWRK 201: TNCNGYGSLC YDPRFVGGDG VMFYFHGSKG GNFAIVSDNN LQINAHFIGT RPVGRTRDFT WVQALNVMFE NHKLVITANR VNQWDETSDA FTIRYDGELI 301: TLPEDEQSEW REISGQKKDI IIERTDERNS VRVLVSDLVQ MDIRVRPIGK EENRVHNYQL PQDDAFAHLE TQFKFLDLSE LVEGVLGKTY RPDYVSSAKT 401: GVPMPVLGGE DKYQTPSLFS PTCRLCRFKP QEESLSADI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)