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AT5G24070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G43480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G24070-MONOMEREC:1.11.1.7eggNOG:ENOG410IG0PeggNOG:ENOG410YECP
EMBL:AB009056EMBL:CP002688EnsemblPlants:AT5G24070EnsemblPlants:AT5G24070.1
entrez:832472GeneID:832472Genevisible:Q9FLV5GO:GO:0004601
GO:GO:0005576GO:GO:0006979GO:GO:0020037GO:GO:0042744
GO:GO:0046872Gramene:AT5G24070.1hmmpanther:PTHR31235hmmpanther:PTHR31235:SF78
HOGENOM:HOG000237556InParanoid:Q9FLV5InterPro:IPR000823InterPro:IPR002016
InterPro:IPR010255InterPro:IPR019793KEGG:00940+1.11.1.7KEGG:ath:AT5G24070
KO:K00430OMA:YLCPPRTPaxDb:Q9FLV5PeroxiBase:227
Pfam:PF00141Pfam:Q9FLV5Pfscan:PS50873PhylomeDB:Q9FLV5
PRIDE:Q9FLV5PRINTS:PR00458PRINTS:PR00461PRO:PR:Q9FLV5
PROSITE:PS00435PROSITE:PS50873ProteinModelPortal:Q9FLV5Proteomes:UP000006548
RefSeq:NP_197795.1scanprosite:PS00435SMR:Q9FLV5STRING:3702.AT5G24070.1
SUPFAM:SSF48113TAIR:AT5G24070UniGene:At.54966UniProt:Q9FLV5
Coordinates (TAIR10) chr5:-:8134301..8135991
Molecular Weight (calculated) 37314.40 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.21
Length 340 amino acids
Sequence (TAIR10)
(BLAST)
001: MQFVNFFPLL ALVVISLAGK ATVEAATGLN PPVKLVWHYY KLTNTCDDAE TYIRYQVEKF YKNDSSIAPK LLRLLYSDCM VNGCDGSILL QGPNSERTAP
101: QNRGLGGFVI IDKIKQVLES RCPGVVSCAD ILNLATRDAV HMAGAPSYPV FTGRRDGGTL NADAVDLPSP SISVDESLAY FKSKGLDVLD MTTLLGAHSM
201: GKTHCSYVVD RLYNFKNTGK PDPTMNTTLV SQLRYLCPPR TQKGQTDPLV YLNPDSGSSN RFTSSYYSRV LSHNAVLRVD QELLNNDDSK EITQEFASGF
301: EDFRKSFALA MSRMGSINVL TGTAGEIRRD CRVTNANDGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)