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AT5G62340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT5G62350.1); Has 262 Blast hits to 262 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 262; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB019235EMBL:BT011000EMBL:BT014833EMBL:CP002688
EnsemblPlants:AT5G62340EnsemblPlants:AT5G62340.1entrez:836355Gene3D:1.20.140.40
GeneID:836355GO:GO:0004857Gramene:AT5G62340.1hmmpanther:PTHR31080
hmmpanther:PTHR31080:SF9HOGENOM:HOG000240597InterPro:IPR006501KEGG:00040+3.1.1.11
KEGG:00500+3.1.1.11KEGG:ath:AT5G62340OMA:VENTCSSPfam:PF04043
PhylomeDB:Q9LVA5Proteomes:UP000006548RefSeq:NP_201040.1SMART:SM00856
STRING:3702.AT5G62340.1SUPFAM:SSF101148TAIR:AT5G62340TIGRfam:TIGR01614
TIGRFAMs:TIGR01614TMHMM:TMhelixUniGene:At.29054unipathway:UPA00545
UniProt:Q9LVA5
Coordinates (TAIR10) chr5:+:25033602..25034222
Molecular Weight (calculated) 22765.10 Da
IEP (calculated) 8.33
GRAVY (calculated) -0.06
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKQYQALFL LFSVFYLFSS VLTTATVNPA GTTTKALNFI QSSCKSTTYQ SLCVETLSVY ANTIKTSPRH LLDAAITVSL NQALSTKLFI SHLRKSQFQI
101: LQDCAPSTDT FSTDCECSVQ ALQEVVNCNS WTDCLFHVKN AEVCAISGES HSVENTCSSP FADPGKISAR GRISDAVRKS LHTRFSKLRQ EINNAKMLFE
201: AFPNKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)