suba logo
AT2G43880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root, carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43890.1); Has 4195 Blast hits to 4175 proteins in 547 species: Archae - 4; Bacteria - 1296; Metazoa - 14; Fungi - 1271; Plants - 1481; Viruses - 2; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G43880-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410JBGT
EMBL:AC004005EMBL:CP002685EnsemblPlants:AT2G43880EnsemblPlants:AT2G43880.1
entrez:818992Gene3D:2.160.20.10GeneID:818992GO:GO:0004650
GO:GO:0005576GO:GO:0005975GO:GO:0071555Gramene:AT2G43880.1
gramene_pathway:3.2.1.15gramene_pathway:PWY-1081hmmpanther:PTHR31375hmmpanther:PTHR31375:SF18
HOGENOM:HOG000237792InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050
InterPro:IPR012334KEGG:ath:AT2G43880OMA:WIERVNCPfam:PF00295
PhylomeDB:Q9SLM8PIR:T00668PROSITE:PS00502Proteomes:UP000006548
RefSeq:NP_181916.1scanprosite:PS00502SMART:SM00710SMR:Q9SLM8
STRING:3702.AT2G43880.1SUPFAM:SSF51126TAIR:AT2G43880TMHMM:TMhelix
UniGene:At.36829UniProt:Q9SLM8
Coordinates (TAIR10) chr2:+:18173034..18174482
Molecular Weight (calculated) 42738.10 Da
IEP (calculated) 10.20
GRAVY (calculated) -0.14
Length 394 amino acids
Sequence (TAIR10)
(BLAST)
001: MANNISFPCA IIFFSINIFF LIKSSHAMPS FNVQRYGARG DGRADATKSF LTAWSLACGS RARAMVYVPR GTYLVKNLVF WGPCKNIITF KNDGTLVAPA
101: NYWDIGNSGY WILFAKVNRI SVYGGTIDAR GAGYWSCRKK GSHCPQGARS ISFSWCNNVL LSGLSSFNSQ NMHVTVHHSS NVRIENVRIR APSGSPNTDG
201: IHVQSSSGVT ISGGTIATGD DCIALSQGSR NIWIERVNCG PGHGISIGSL GDYANEEGVQ NVTVTSSVFT KTQNGVRIKT WARPSRGFVN NVVFRNLIMN
301: NVENPVIIDQ NYCPNGKGCP RQSSGVKISG VTFANIKGTS TTPIAMKLDC SGSNHCTGLR LQDIKLTYMR RSSASYCRNA HGRASGVMVP RNCM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)