AT1G05280.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.918 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF604) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF604); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G15240.1); Has 523 Blast hits to 513 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 61; Fungi - 172; Plants - 273; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:1535444..1537414 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53034.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.98 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||
| Length | 461 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCLPFRPVSK TYYSSSSSTI VTRMVNCILL FVFILLVYLL ISASRLQSKN SIHAYFSSSD QDQSQSPTKI EHIVFGIGSS AISWRARREY VKLWWDAQKM 101: RGCVFVERPL PSSQNHTDSY LLPPVCVSQD TSRFRYTWRG GDRNAIRIAR CVLETVRLFN TSSEEVRWYV FGDDDTIFIP ENLARTLSKY DHTSWYYIGS 201: TSEIYHQNSM FGHDMAFGGG GYALSSSLAN VLARNFDSCI ERYPHLYGGD SRVYACVLEL GVGLSKEPGF HQFDVRGNAL GILTSHSTRP LVSLHHMAHI 301: DPIFPNSTTF SAVRHLFSAV QLDPLRIFQL SVCYDRWYSW TISVSWGYTV QIDGRHLFLR DVLRAQETFR PWQKSGGLAS VYTFNTREIH RDPCQRPVTF 401: YMQHVSSSSH DGTIKSVYKQ AYENCTYDPV TSPRKIHEIR VFSRRLDPNI RQQSPLEKII F |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)