suba logo
AT5G04970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G10720.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G04970-MONOMEREC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IGST
EMBL:AB005245EMBL:CP002688EnsemblPlants:AT5G04970EnsemblPlants:AT5G04970.1
entrez:830379Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:830379
Genevisible:Q9FF77GO:GO:0004857GO:GO:0005576GO:GO:0005618
GO:GO:0030599GO:GO:0042545GO:GO:0045330GO:GO:0045490
Gramene:AT5G04970.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31707
hmmpanther:PTHR31707:SF21HOGENOM:HOG000217409InParanoid:Q9FF77InterPro:IPR000070
InterPro:IPR006501InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131
KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT5G04970KO:K01051
OMA:TIISGNHPaxDb:Q9FF77Pfam:PF01095Pfam:PF04043
Pfam:Q9FF77PhylomeDB:Q9FF77PRIDE:Q9FF77PRO:PR:Q9FF77
PROSITE:PS00503ProteinModelPortal:Q9FF77Proteomes:UP000006548RefSeq:NP_196116.1
scanprosite:PS00503SMART:SM00856SMR:Q9FF77STRING:3702.AT5G04970.1
SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT5G04970UniGene:At.27773
UniPathway:UPA00545UniProt:Q9FF77
Coordinates (TAIR10) chr5:-:1464262..1467001
Molecular Weight (calculated) 68151.80 Da
IEP (calculated) 8.26
GRAVY (calculated) -0.31
Length 624 amino acids
Sequence (TAIR10)
(BLAST)
001: MQTHSSSLVF LALLCLSWAL LVSPTRPPSQ PPSHPPIQPS SQPPTQPPSQ PPTQPPTQPP SHPPTQPPTP PPSQSPSQPS PLPPNIACKS TPYPKLCRTI
101: LSAVKSSPSD PYHYGKFTMK QCLKQARRLS KVINRFAQRV EADPGTSTVE EVSAVADCGE LAELSVEYLE TVTEELKAAE LMTAALVDRV TSLLGGVVTN
201: QQTCLDGLVD AKSGFATAIG TPLGNLTRLY SVSLGLVSHA LNRNLKRYKG SKGKIFGGGN KPVREPLETL IKVLRKTCDK GKDCRKANRN LGELGETSGG
301: SILVREAVTV GPYETDNFPT ITEAVAAAPN HTFPEQGYFV IYARAGLYEE YVVISNKKRN IMLIGDGINK TIISGNHSFI DGWTTYNSST FAVVGDRFVA
401: VDVTFRNTAG PEKHQAVAVR NNADGSTFYR CSFEGYQDTL YVHSLRQFYR ECDIYGTIDF IFGNAAAIFQ NCNIYARKPM ANQKNAVTAH GRTDPNQKTG
501: ISIINCTIGA APDLAADPKS TMTFLGRPWK PYSRTVYIQS YISDVVQPVG WLEWNGTTGL DTISYGEYDN FGPGADTSKR VQWSGYSLLN LVQAMNFTVY
601: NFTLGDTWLP QTDIPFYGGL LHTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)