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AT3G59850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G43870.1); Has 4315 Blast hits to 4302 proteins in 546 species: Archae - 4; Bacteria - 1265; Metazoa - 14; Fungi - 1413; Plants - 1493; Viruses - 2; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G59850-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IJFS
EMBL:BT015766EMBL:BT020180EMBL:CP002686EnsemblPlants:AT3G59850
EnsemblPlants:AT3G59850.1entrez:825155Gene3D:2.160.20.10GeneID:825155
GO:GO:0004650GO:GO:0005576GO:GO:0005975GO:GO:0016829
GO:GO:0071555Gramene:AT3G59850.1hmmpanther:PTHR31375hmmpanther:PTHR31375:SF2
HOGENOM:HOG000237792InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050
InterPro:IPR012334KEGG:ath:AT3G59850KO:K01184OMA:CSHAGGS
Pfam:PF00295PhylomeDB:Q5XF50PROSITE:PS00502Proteomes:UP000006548
RefSeq:NP_191544.2scanprosite:PS00502SMART:SM00710SMR:Q5XF50
STRING:3702.AT3G59850.1SUPFAM:SSF51126TAIR:AT3G59850UniGene:At.34545
UniProt:Q5XF50
Coordinates (TAIR10) chr3:-:22109343..22111566
Molecular Weight (calculated) 41253.30 Da
IEP (calculated) 9.09
GRAVY (calculated) -0.07
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MHSSLLIVLL FLLSVSSSSA QTYNILSYGA KPDGKTDSTK AFTVLWAKAC ASVKPVTILV PKGRFLLRSI IFDGSKCKRK SVTFRIQGTL VAPSDYRVIG
101: KENYWILFQH LDGISVYGGV LDAQGASLWS CKKSGKNCPS GATSIGFQSS RNVVISGLTS LNSQMFHVAI NGCSNVKLDG VKVSADGNSP NTDGIHVQSS
201: STVSILNSKI STGDDCVSIG PGTNGLWIEN VACGPGHGIS IGSLGKESVE VGVQNITVKT ATFTGTENGV RIKSWARPSN GFAKNIRFQH CVMNNVQNPI
301: VIDQNYCPGN ENCPNQVSGI KISDVMFFDI HGTSATEVGV KLDCSSKKPC TGIRIQDVKL TYRNKPATTD CSHAGGSEAG FQRPNSCL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)