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AT4G01630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin A17
Curator
Summary (TAIR10)
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin A17 (EXPA17); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A14 (TAIR:AT5G56320.1); Has 2142 Blast hits to 2139 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 24; Plants - 2075; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II2VeggNOG:ENOG410YDKUEMBL:AF104919EMBL:AL161492
EMBL:CP002687EnsemblPlants:AT4G01630EnsemblPlants:AT4G01630.1entrez:827983
Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:827983Genevisible:Q9ZSI1
GO:GO:0005576GO:GO:0005618GO:GO:0009664GO:GO:0016020
Gramene:AT4G01630.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF34HOGENOM:HOG000220793
InParanoid:Q9ZSI1InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117
InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT4G01630OMA:MFFMKIS
PaxDb:Q9ZSI1Pfam:PF01357Pfam:PF03330Pfam:Q9ZSI1
Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q9ZSI1PIR:T02010
PRIDE:Q9ZSI1PRINTS:PR01225PRINTS:PR01226PRO:PR:Q9ZSI1
PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q9ZSI1Proteomes:UP000006548
RefSeq:NP_192072.1SMART:SM00837SMR:Q9ZSI1STRING:3702.AT4G01630.1
SUPFAM:SSF49590SUPFAM:SSF50685TAIR:AT4G01630tair10-symbols:ATEXP17
tair10-symbols:ATEXPA17tair10-symbols:ATHEXP ALPHA 1.13tair10-symbols:EXPA17TMHMM:TMhelix
UniGene:At.54085UniProt:Q9ZSI1
Coordinates (TAIR10) chr4:+:700653..701527
Molecular Weight (calculated) 27716.20 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.10
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKIFSLLVA MIFSTMFFMK ISSVSAGWLQ AHATFYGGSD ASGTMGGACG YGNLYTDGYK TNTAALSTAL FNDGKSCGGC YQILCDATKV PQWCLKGKSI
101: TITATNFCPP NFAQASDNGG WCNPPRPHFD MAQPAFLTIA KYKAGIVPIL YKKVGCRRSG GMRFTINGRN YFELVLISNV AGGGEISKVW IKGSKSNKWE
201: TMSRNWGANY QSNTYLNGQS LSFKVQLSDG SIKAALNVVP SNWRFGQSFK SNVNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)