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AT4G26050.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.627
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant intracellular ras group-related LRR 8
Curator
Summary (TAIR10)
Encodes PIRL8, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.
Computational
Description (TAIR10)
plant intracellular ras group-related LRR 8 (PIRL8); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 6 (TAIR:AT2G19330.1); Has 73298 Blast hits to 32440 proteins in 1234 species: Archae - 33; Bacteria - 7555; Metazoa - 32830; Fungi - 2348; Plants - 26304; Viruses - 23; Other Eukaryotes - 4205 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AL049483EMBL:AL161564
EMBL:AY093142EMBL:AY849578EMBL:BT008469EMBL:CP002687
EnsemblPlants:AT4G26050EnsemblPlants:AT4G26050.1entrez:828711Gene3D:3.80.10.10
GeneID:828711Genevisible:Q8RWE5Gramene:AT4G26050.1hmmpanther:PTHR23155
HOGENOM:HOG000241007InParanoid:Q8RWE5InterPro:IPR001611InterPro:IPR003591
InterPro:IPR032675KEGG:ath:AT4G26050OMA:EKMTESYPaxDb:Q8RWE5
Pfam:PF13855Pfam:Q8RWE5Pfscan:PS51450PhylomeDB:Q8RWE5
PIR:T04260PRIDE:Q8RWE5PRO:PR:Q8RWE5PROSITE:PS51450
ProteinModelPortal:Q8RWE5Proteomes:UP000006548RefSeq:NP_194335.2SMART:SM00369
SMR:Q8RWE5STRING:3702.AT4G26050.1SUPFAM:SSF52058TAIR:AT4G26050
tair10-symbols:PIRL8UniGene:At.43405UniProt:Q8RWE5
Coordinates (TAIR10) chr4:+:13210522..13213149
Molecular Weight (calculated) 42442.50 Da
IEP (calculated) 9.94
GRAVY (calculated) -0.26
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGYEQMNQM TMTTTAMMKN YNKKGLINTP QKKMTRRSVS AIDGGAAATA KEGDRRQNIK TLDLSGMSLA SLSASSINLA SISKLDLSNN NIQKIPESLV
101: ARMLNLWALD LQSNQLKTLP NSIGCLSKLK FLNVSGNYLQ SLPKTIEDCR SLEELNANFN ELTRLPDAIG FELTNLTKLS VNSNKLVLLP NSVSYLTSLR
201: VLDARLNRLS SLPEDLENLV NLQVLNVSQN FQHLTTLPYS VGLLISLVEL DVSYNGITVL PDSLGCLRRI QKLSVEGNPL ISPPFEVVEQ GLEALKQYMS
301: EKMTESYKKT PTKKKSWGIG KLVKYGLSSS PGRSTGREDG KEGFINVSDY RQIDGIASPR HVSLFNPRRL LSPLSAYFSP PRY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)