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AT3G45060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : high affinity nitrate transporter 2.6
Curator
Summary (TAIR10)
member of High affinity nitrate transporter family
Computational
Description (TAIR10)
high affinity nitrate transporter 2.6 (NRT2.6); FUNCTIONS IN: nitrate transmembrane transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 2.3 (TAIR:AT5G60780.1); Has 6705 Blast hits to 6593 proteins in 1499 species: Archae - 65; Bacteria - 5860; Metazoa - 18; Fungi - 311; Plants - 270; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Protein Annotations
BioGrid:8961eggNOG:COG2223eggNOG:ENOG410JXE6EMBL:AL353992
EMBL:BT011687EMBL:BT015382EMBL:CP002686EnsemblPlants:AT3G45060
EnsemblPlants:AT3G45060.1entrez:823641GeneID:823641Genevisible:Q9LXH0
GO:GO:0005886GO:GO:0009507GO:GO:0015112GO:GO:0015706
GO:GO:0016021GO:GO:0042128GO:GO:0080167Gramene:AT3G45060.1
hmmpanther:PTHR23515hmmpanther:PTHR23515:SF2HOGENOM:HOG000196276InParanoid:Q9LXH0
InterPro:IPR011701InterPro:IPR020846iPTMnet:Q9LXH0KEGG:ath:AT3G45060
KO:K02575OMA:TEWLPTYPaxDb:Q9LXH0Pfam:PF07690
Pfam:Q9LXH0Pfscan:PS50850PhylomeDB:Q9LXH0PIR:T48982
PRIDE:Q9LXH0PRO:PR:Q9LXH0PROSITE:PS50850ProteinModelPortal:Q9LXH0
Proteomes:UP000006548RefSeq:NP_190092.1STRING:3702.AT3G45060.1SUPFAM:SSF103473
TAIR:AT3G45060tair10-symbols:ATNRT2.6tair10-symbols:NRT2.6TMHMM:TMhelix
UniGene:At.48735UniProt:Q9LXH0
Coordinates (TAIR10) chr3:-:16477671..16479386
Molecular Weight (calculated) 58640.40 Da
IEP (calculated) 8.71
GRAVY (calculated) 0.38
Length 542 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHNHSNEDG SIGTSLHGVT AREQVFSFSV QEDVPSSQAV RTNDPTAKFA LPVDSEHRAK VFKPLSFAKP HMRAFHLGWI SFFTCFISTF AAAPLVPVIR
101: DNLDLTKTDI GNAGVASVSG AIFSRLAMGA VCDLLGARYG TAFSLMLTAP AVFSMSFVAD AGSYLAVRFM IGFCLATFVS CQYWTSVMFT GKIIGLVNGC
201: AGGWGDMGGG VTQLLMPMVF HVIKLTGATP FTAWRFAFFI PGILQIVMGI LVLTLGQDLP DGNLSTLQKS GQVSKDKFSK VFWFAVKNYR TWILFMLYGF
301: SMGVELTINN VISGYFYDRF NLTLHTAGII AASFGMANFF ARPFGGYASD VAARLFGMRG RLWILWILQT VGALFCIWLG RASSLPIAIL AMMLFSMGTQ
401: AACGALFGVA PFVSRRSLGL ISGLTGAGGN FGSGVTQLLF FSSSRFSTAE GLSLMGVMAV VCSLPVAFIH FPQWGSMFLR PSQDGEKSKE EHYYGAEWTE
501: EEKSLGLHEG SIKFAENSRS ERGRKAMLAD IPTPETGSPA HV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)