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AT2G16660.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G34950.1); Has 3381 Blast hits to 3270 proteins in 872 species: Archae - 26; Bacteria - 1620; Metazoa - 6; Fungi - 314; Plants - 598; Viruses - 0; Other Eukaryotes - 817 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK15eggNOG:ENOG410Y7MYEMBL:AC005825EMBL:AY070369
EMBL:AY095988EMBL:BT000835EMBL:CP002685EnsemblPlants:AT2G16660
EnsemblPlants:AT2G16660.1entrez:816167GeneID:816167GO:GO:0016021
GO:GO:0080167Gramene:AT2G16660.1hmmpanther:PTHR21576hmmpanther:PTHR21576:SF17
HOGENOM:HOG000240321InterPro:IPR010658InterPro:IPR020846KEGG:ath:AT2G16660
ncoils:CoilOMA:NTTCALVPfam:PF06813PhylomeDB:Q9SLF1
PIR:F84542Proteomes:UP000006548RefSeq:NP_179257.1STRING:3702.AT2G16660.1
SUPFAM:SSF103473TAIR:AT2G16660TMHMM:TMhelixUniGene:At.13287
UniProt:Q9SLF1
Coordinates (TAIR10) chr2:-:7218930..7221592
Molecular Weight (calculated) 58980.70 Da
IEP (calculated) 8.22
GRAVY (calculated) 0.61
Length 546 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFQRSISSS SALKWLGFVT AVWVQSISGN NYTFSNYSGA LKSLMNLNQL ELNNLSVAKD VGKAFGILAG LASDRLPTPV ILLIGCFEGL LGYGVQWLVV
101: SRTIQPIPYW QMCIFLCMGG NSTTWMNTAV LVTCIRNFRR NRGPVSGILK GYVGLSTAIF TDLCTALFSN DPASFLVLLA VVPFAVCLTA VFFLREIPPA
201: SSAAEENEET RYFTIFNIVA VVVAVYLQSY DIIGIKTGVF SVAFASILLF LLASPIAIPF HSFIKSLNYG EQDDLEGRIQ EPLLRSEIAA AEKEVIVVAA
301: VAAEEEEKKR KKPVLGEDHT IMEAVLTVDF WVLFVSFLCG VGTGLAVMNN MGQIGLALGY TNVSIFVSMT SIWGFFGRIL SGTLSEYFLK KAGTPRPLWN
401: AASQILMAVG YILMALAVPN SLYIGSMVVG VCYGVRLAIT VPTASELFGL KYYGLIYNIL VLNLPLGSFL FSGLLAGFLY DAEATPTPGG GNTCVGAHCY
501: RLIFIVMALA SVIGVGLDLV LAYRTKEIYA KIHASKKSKK SGGSLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)