AT5G23870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pectinacetylesterase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT3G62060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8046309..8049999 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45965.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.24 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTTTRLLDL TAAMVLVVYV SFSPPLVSGE PGRRVSMTLV RDAAALGAFC LDGSLPAYHL DRGFGAGSNN WILQFEGGGW CNDIASCVER AKTRRGSTRY 101: MSKTVVFTGV LSNNASQNPD FYNWNKVRLR YCDGASFAGD SQFGNGTSLL YFRGQRIWNA IILDLLPKGL AKAHKALLTG CSAGGLSTFL HCDNFTSYLP 201: KNASVKCMSD AGFFLDAIDV AANRTMRSFY SQLVSLQGIQ KNLDPSCTHA FFPEPSLCFF PQYVLRFIKT PFFILNSAYD VFQFHHGLVP PSADQTGRWN 301: RCKLNVTACN PHQLDALQGF RKDMLGALMN FFRNSTRGGM FINSCFDHCQ SALEETWLSP TSPRINNKTI AETVGDWYFG RGEEAKEIGC PYPCDKTCHN 401: LIPASTSDFL VNLDI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)