AT5G07580.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.810 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Integrase-type DNA-binding superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61590.1); Has 5961 Blast hits to 5673 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5951; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:2399525..2400349 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 31161.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 274 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MTPSLKPLRE RQNHSFFFVS LPHPWLLKSC DYLLVSFLFS FPLLYKNQNI HSFCSIITCR FFLSFVKMAS FEESSDLEAI QSHLLEDLLV CDGFMGDFDF 101: DASFVSGLWC IEPHVPKQEP DSPVLDPDSF VNEFLQVEGE SSSSSSPELN SSSSTYETDQ SVKKAERFEE EVDARHYRGV RRRPWGKFAA EIRDPAKKGS 201: RIWLGTFESD VDAARAYDCA AFKLRGRKAV LNFPLDAGKY EAPANSGRKR KRSDVHEELQ RTQSNSSSSS CDAF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)