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AT5G07580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.810
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61590.1); Has 5961 Blast hits to 5673 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5951; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYJIeggNOG:ENOG4111416EMBL:AB010070EMBL:AL163912
EMBL:AY052266EMBL:AY060524EMBL:CP002688EnsemblPlants:AT5G07580
EnsemblPlants:AT5G07580.1entrez:830651Gene3D:3.30.730.10GeneID:830651
Genevisible:Q9LY05GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873Gramene:AT5G07580.1hmmpanther:PTHR31677
hmmpanther:PTHR31677:SF24HOGENOM:HOG000272710InParanoid:Q9LY05InterPro:IPR001471
InterPro:IPR016177KEGG:ath:AT5G07580PaxDb:Q9LY05Pfam:PF00847
Pfam:Q9LY05Pfscan:PS51032PhylomeDB:Q9LY05PIR:T49897
PRINTS:PR00367PRO:PR:Q9LY05PROSITE:PS51032ProteinModelPortal:Q9LY05
Proteomes:UP000006548RefSeq:NP_196375.2SMART:SM00380SMR:Q9LY05
STRING:3702.AT5G07580.1SUPFAM:SSF54171TAIR:AT5G07580UniGene:At.26419
UniProt:Q9LY05
Coordinates (TAIR10) chr5:+:2399525..2400349
Molecular Weight (calculated) 31161.40 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.45
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPSLKPLRE RQNHSFFFVS LPHPWLLKSC DYLLVSFLFS FPLLYKNQNI HSFCSIITCR FFLSFVKMAS FEESSDLEAI QSHLLEDLLV CDGFMGDFDF
101: DASFVSGLWC IEPHVPKQEP DSPVLDPDSF VNEFLQVEGE SSSSSSPELN SSSSTYETDQ SVKKAERFEE EVDARHYRGV RRRPWGKFAA EIRDPAKKGS
201: RIWLGTFESD VDAARAYDCA AFKLRGRKAV LNFPLDAGKY EAPANSGRKR KRSDVHEELQ RTQSNSSSSS CDAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)