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AT1G72416.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G14200.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:CP002684EMBL:DQ487465
EnsemblPlants:AT1G72416EnsemblPlants:AT1G72416.1entrez:3767688ExpressionAtlas:Q1G3W9
Gene3D:1.10.287.110GeneID:3767688Gramene:AT1G72416.1hmmpanther:PTHR24078
hmmpanther:PTHR24078:SF231InterPro:IPR001623InterPro:IPR018253KEGG:ath:AT1G72416
Pfam:PF00226Pfscan:PS50076PhylomeDB:Q1G3W9PRINTS:PR00625
PROSITE:PS00636PROSITE:PS50076Proteomes:UP000006548RefSeq:NP_001031268.1
scanprosite:PS00636SMART:SM00271SMR:Q1G3W9STRING:3702.AT1G72416.3
SUPFAM:SSF46565TAIR:AT1G72416UniGene:At.47738UniProt:Q1G3W9
Coordinates (TAIR10) chr1:-:27258995..27260109
Molecular Weight (calculated) 21258.50 Da
IEP (calculated) 4.38
GRAVY (calculated) -0.78
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MEREDLYAVL DLNNECTQGD LRLSYKNLVL KWHPDRFLEE IEKDEAKMKF QSIQRAYSVL SDSNKRLLYD VGAYDSDDDE TGMADFINEM VTLMAQTQST
101: GDESLEEFEE LFQELLKDDV NQFKTRSSSS SCSQFSGTST LVHCDDLSNS NDIPNKINGH DNYCCISSSK VGGPSTRFQA GNRRSKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)