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AT1G72360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational
Description (TAIR10)
HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 (HRE1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G47520.1); Has 6115 Blast hits to 5780 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6076; Viruses - 2; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
BioGrid:28788eggNOG:ENOG410IZCZeggNOG:ENOG410YQNQEMBL:AC016529
EMBL:BT002063EMBL:BT006259EMBL:CP002684EnsemblPlants:AT1G72360
EnsemblPlants:AT1G72360.1entrez:843568ExpressionAtlas:Q8H0T5Gene3D:3.30.730.10
GeneID:843568Genevisible:Q8H0T5GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873hmmpanther:PTHR31190
hmmpanther:PTHR31190:SF4HOGENOM:HOG000237624InParanoid:Q8H0T5IntAct:Q8H0T5
InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT1G72360PaxDb:Q8H0T5
Pfam:PF00847Pfam:Q8H0T5Pfscan:PS51032PhylomeDB:Q8H0T5
PIR:E96747PRIDE:Q8H0T5PRINTS:PR00367PRO:PR:Q8H0T5
PROSITE:PS51032ProteinModelPortal:Q8H0T5Proteomes:UP000006548RefSeq:NP_001077812.1
RefSeq:NP_177380.2SMART:SM00380SMR:Q8H0T5STRING:3702.AT1G72360.2
SUPFAM:SSF54171TAIR:AT1G72360tair10-symbols:HRE1UniGene:At.35111
UniGene:At.68119UniProt:Q8H0T5
Coordinates (TAIR10) chr1:+:27242142..27242777
Molecular Weight (calculated) 23662.30 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.73
Length 211 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQSFELYPW LGSASDGKKK QSSRYKGIRR RPWGRWAAEI RDPIKGVRVW LGTFNTAEEA ARAYDLEAKR IRGAKAKLNF PNESSGKRKA KAKTVQQVEE
101: NHEADLDVAV VSSAPSSSCL DFLWEENNPD TLLIDTQWLE DIIMGDANKK HEPNDSEEAN NVDASLLSEE LLAFENQTEY FSQMPFTEGN CDSSTSLSSL
201: FDGGNDMGLW S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)