AT2G18860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.559 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Syntaxin/t-SNARE family protein | ||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Syntaxin/t-SNARE family protein; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT4G30240.1); Has 122 Blast hits to 122 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:8164358..8165650 | ||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 33777.20 Da | ||||||||||||||||||||||||||||||||
IEP (calculated) | 6.08 | ||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
Length | 296 amino acids | ||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMVVNSFDLW QKDVFFSAAE EVQKSTDIME SAYRLWIREK KDEICKELQA ALGTAKWQLE EFEKAVRLSH KRCGDNDSSS TRHKQFVTAI ENQIHRVETS 101: LQEAYSENGK KPLRWVDLNE EERDDLAMFL SGSSRTSQSF SGESSIKSRE STNSSLVENV MEVSAKVTFK KAKVYGDGSE CVIDIEERVT PGQAEKSVGL 201: RRIWSSPNFN SLRIIVPGGD NEEEKETLVA QIEATPKVKG TKSVLWMQRL PDHNQLFDKT GCFQNPIRLP FNHPIKFIVS LLLMVFLLLP FVVYLS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)