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AT2G18860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.559
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Syntaxin/t-SNARE family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Syntaxin/t-SNARE family protein; INVOLVED IN: Golgi vesicle transport, vesicle-mediated transport; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: t-SNARE (InterPro:IPR010989), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: Syntaxin/t-SNARE family protein (TAIR:AT4G30240.1); Has 122 Blast hits to 122 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYWReggNOG:ENOG410YID8EMBL:AK226210EMBL:BT022066
EMBL:BT026064EMBL:CP002685EnsemblPlants:AT2G18860EnsemblPlants:AT2G18860.1
entrez:816401ExpressionAtlas:Q501A1GeneID:816401GO:GO:0005634
GO:GO:0016021GO:GO:0048193Gramene:AT2G18860.1hmmpanther:PTHR34949
hmmpanther:PTHR34949:SF1HOGENOM:HOG000239840InterPro:IPR010989InterPro:IPR015260
ncoils:CoilOMA:SECVIDIPfam:PF09177PhylomeDB:Q501A1
Proteomes:UP000006548RefSeq:NP_179476.2SMR:Q501A1SUPFAM:SSF47661
TAIR:AT2G18860TMHMM:TMhelixUniGene:At.39934UniProt:Q501A1
Coordinates (TAIR10) chr2:+:8164358..8165650
Molecular Weight (calculated) 33777.20 Da
IEP (calculated) 6.08
GRAVY (calculated) -0.42
Length 296 amino acids
Sequence (TAIR10)
(BLAST)
001: MMVVNSFDLW QKDVFFSAAE EVQKSTDIME SAYRLWIREK KDEICKELQA ALGTAKWQLE EFEKAVRLSH KRCGDNDSSS TRHKQFVTAI ENQIHRVETS
101: LQEAYSENGK KPLRWVDLNE EERDDLAMFL SGSSRTSQSF SGESSIKSRE STNSSLVENV MEVSAKVTFK KAKVYGDGSE CVIDIEERVT PGQAEKSVGL
201: RRIWSSPNFN SLRIIVPGGD NEEEKETLVA QIEATPKVKG TKSVLWMQRL PDHNQLFDKT GCFQNPIRLP FNHPIKFIVS LLLMVFLLLP FVVYLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)